ENSG00000153048


Homo sapiens

Features
Gene ID: ENSG00000153048
  
Biological name :CARHSP1
  
Synonyms : calcium regulated heat stable protein 1 / CARHSP1 / Q9Y2V2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p13.2
Gene start: 8852942
Gene end: 8869012
  
Corresponding Affymetrix probe sets: 1566134_at (Human Genome U133 Plus 2.0 Array)   1566135_at (Human Genome U133 Plus 2.0 Array)   218384_at (Human Genome U133 Plus 2.0 Array)   224910_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000483591
Ensembl peptide - ENSP00000311847
Ensembl peptide - ENSP00000379838
Ensembl peptide - ENSP00000480542
Ensembl peptide - ENSP00000481550
Ensembl peptide - ENSP00000455016
Ensembl peptide - ENSP00000455284
Ensembl peptide - ENSP00000455522
Ensembl peptide - ENSP00000455855
Ensembl peptide - ENSP00000455988
Ensembl peptide - ENSP00000456909
Ensembl peptide - ENSP00000457213
Ensembl peptide - ENSP00000457864
Ensembl peptide - ENSP00000460812
Ensembl peptide - ENSP00000478055
Ensembl peptide - ENSP00000480144
NCBI entrez gene - 23589     See in Manteia.
OMIM - 616885
RefSeq - NM_001278263
RefSeq - XM_011522444
RefSeq - XM_005255229
RefSeq - XM_005255228
RefSeq - NM_014316
RefSeq - NM_001278266
RefSeq - NM_001278265
RefSeq - NM_001042476
RefSeq - NM_001278260
RefSeq - NM_001278261
RefSeq - NM_001278262
RefSeq - NM_001278264
RefSeq Peptide - NP_001265195
RefSeq Peptide - NP_001035941
RefSeq Peptide - NP_001265189
RefSeq Peptide - NP_001265190
RefSeq Peptide - NP_001265191
RefSeq Peptide - NP_001265192
RefSeq Peptide - NP_001265193
RefSeq Peptide - NP_001265194
RefSeq Peptide - NP_055131
swissprot - I3L3X8
swissprot - H3BUY4
swissprot - H3BTK3
swissprot - H3BQY0
swissprot - H3BPY5
swissprot - H3BSW7
swissprot - H3BNU9
swissprot - Q9Y2V2
Ensembl - ENSG00000153048
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 carhsp1ENSDARG00000053129Danio rerio
 CARHSP1ENSGALG00000042981Gallus gallus
 Q9CR86ENSMUSG00000008393Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSDC2 / Q9Y534 / cold shock domain containing C2ENSG0000017234663


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0035556 intracellular signal transduction TAS
 biological_processGO:0043488 regulation of mRNA stability IBA
 cellular_componentGO:0000177 cytoplasmic exosome (RNase complex) ISS
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0043186 P granule ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019902 phosphatase binding NAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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