ENSDARG00000041830


Danio rerio

Features
Gene ID: ENSDARG00000041830
  
Biological name :tsn
  
Synonyms : translin / tsn
  
Possible biological names infered from orthology : Q15631 / Q62348
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 22929675
Gene end: 22939510
  
Corresponding Affymetrix probe sets: Dr.25590.1.A1_at (Zebrafish Array)   Dr.25590.1.A1_a_at (Zebrafish Array)   Dr.25590.2.A1_at (Zebrafish Array)   NM_001025452_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000061298
NCBI entrez gene - 334107     See in Manteia.
RefSeq - NM_001025452
RefSeq Peptide - NP_001020623
swissprot - Q4V9N1
ZFIN ID - ZDB-GENE-030131-6039
Ensembl - ENSDARG00000041830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSNENSGALG00000011652Gallus gallus
 TSNENSG00000211460Homo sapiens
 TsnENSMUSG00000026374Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002848  Translin family
 IPR016068  Translin, N-terminal
 IPR033956  Translin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016070 RNA metabolic process IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Small interfering RNA (siRNA) biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000041830 tsn / translin / Q15631* / Q62348*  / complex






 

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contact: otassy@igbmc.fr