ENSDARG00000041887


Danio rerio

Features
Gene ID: ENSDARG00000041887
  
Biological name :sf3a1
  
Synonyms : sf3a1 / splicing factor 3a, subunit 1
  
Possible biological names infered from orthology : Q15459 / Q8K4Z5
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 36554816
Gene end: 36570665
  
Corresponding Affymetrix probe sets: Dr.5574.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000150615
Ensembl peptide - ENSDARP00000061377
Ensembl peptide - ENSDARP00000108576
Ensembl peptide - ENSDARP00000113481
NCBI entrez gene - 796388     See in Manteia.
RefSeq - NM_200094
RefSeq - XM_005167228
RefSeq - XM_005167231
RefSeq - XM_021478322
RefSeq Peptide - NP_956388
swissprot - E9QJK9
swissprot - Q90X41
ZFIN ID - ZDB-GENE-030616-156
Ensembl - ENSDARG00000041887
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3A1ENSGALG00000007937Gallus gallus
 SF3A1ENSG00000099995Homo sapiens
 Sf3a1ENSMUSG00000002129Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR000626  Ubiquitin domain
 IPR022030  Splicing factor 3A subunit 1
 IPR029071  Ubiquitin-like domain superfamily
 IPR035563  Splicing factor 3A subunit 1, ubiquitin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0000389 mRNA 3"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000021107 sf3a2 / splicing factor 3a, subunit 2 / Q15428*  / complex






 

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contact: otassy@igbmc.fr