ENSDARG00000021107


Danio rerio

Features
Gene ID: ENSDARG00000021107
  
Biological name :sf3a2
  
Synonyms : sf3a2 / splicing factor 3a, subunit 2
  
Possible biological names infered from orthology : Q15428
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 57825432
Gene end: 57837838
  
Corresponding Affymetrix probe sets: Dr.10414.1.A1_at (Zebrafish Array)   Dr.25795.1.A1_x_at (Zebrafish Array)   NM_201043_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000003884
Ensembl peptide - ENSDARP00000153395
NCBI entrez gene - 394018     See in Manteia.
RefSeq - NM_201043
RefSeq Peptide - NP_957337
swissprot - Q7ZVD4
ZFIN ID - ZDB-GENE-040426-897
Ensembl - ENSDARG00000021107
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3A2ENSGALG00000021679Gallus gallus
 SF3A2ENSG00000104897Homo sapiens
 Sf3a2ENSMUSG00000020211Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR031781  SF3A2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000041887 sf3a1 / splicing factor 3a, subunit 1 / Q15459* / Q8K4Z5*  / complex






 

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contact: otassy@igbmc.fr