ENSGALG00000021679


Gallus gallus

Features
Gene ID: ENSGALG00000021679
  
Biological name :SF3A2
  
Synonyms : SF3A2 / splicing factor 3a subunit 2
  
Possible biological names infered from orthology : Q15428
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 2024224
Gene end: 2028358
  
Corresponding Affymetrix probe sets: Gga.17237.1.S1_at (Chicken Array)   GgaAffx.22254.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056297
Ensembl peptide - ENSGALP00000001205
NCBI entrez gene - 420077     See in Manteia.
RefSeq - XM_015299852
RefSeq - NM_001004397
RefSeq Peptide - NP_001004397
swissprot - Q66VY4
swissprot - A0A1D5PTP8
Ensembl - ENSGALG00000021679
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3a2ENSDARG00000021107Danio rerio
 SF3A2ENSG00000104897Homo sapiens
 Sf3a2ENSMUSG00000020211Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR031781  SF3A2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001540 SF3A3 / splicing factor 3a subunit 3 / Q12874* / Q9D554*  / complex
 ENSGALG00000007937 SF3A1 / splicing factor 3a subunit 1 / Q15459* / Q8K4Z5*  / complex






 

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contact: otassy@igbmc.fr