ENSGALG00000007937


Gallus gallus

Features
Gene ID: ENSGALG00000007937
  
Biological name :SF3A1
  
Synonyms : SF3A1 / splicing factor 3a subunit 1
  
Possible biological names infered from orthology : Q15459 / Q8K4Z5
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 10885754
Gene end: 10899245
  
Corresponding Affymetrix probe sets: Gga.9742.1.S1_s_at (Chicken Array)   GgaAffx.11603.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012879
Ensembl peptide - ENSGALP00000060029
Ensembl peptide - ENSGALP00000059155
Ensembl peptide - ENSGALP00000050317
NCBI entrez gene - 427717     See in Manteia.
RefSeq - NM_001031472
RefSeq Peptide - NP_001026643
swissprot - A0A1L1RMN5
swissprot - A0A1L1RK91
swissprot - A0A1D5PC32
swissprot - F1NU16
Ensembl - ENSGALG00000007937
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3a1ENSDARG00000041887Danio rerio
 SF3A1ENSG00000099995Homo sapiens
 Sf3a1ENSMUSG00000002129Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR000626  Ubiquitin domain
 IPR019956  Ubiquitin
 IPR022030  Splicing factor 3A subunit 1
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0000389 mRNA 3"-splice site recognition IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001540 SF3A3 / splicing factor 3a subunit 3 / Q12874* / Q9D554*  / complex
 ENSGALG00000021679 SF3A2 / splicing factor 3a subunit 2 / Q15428*  / complex






 

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