ENSMUSG00000020211


Mus musculus

Features
Gene ID: ENSMUSG00000020211
  
Biological name :Sf3a2
  
Synonyms : Sf3a2 / splicing factor 3a, subunit 2
  
Possible biological names infered from orthology : Q15428
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: C1
Gene start: 80798198
Gene end: 80804924
  
Corresponding Affymetrix probe sets: 10364890 (MoGene1.0st)   1450576_a_at (Mouse Genome 430 2.0 Array)   1455546_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000117160
Ensembl peptide - ENSMUSP00000114164
Ensembl peptide - ENSMUSP00000116478
NCBI entrez gene - 20222     See in Manteia.
MGI - MGI:104912
RefSeq - XM_006513397
RefSeq - NM_013651
RefSeq - XM_006513394
RefSeq - XM_006513395
RefSeq Peptide - NP_038679
swissprot - G3UVU2
swissprot - D3Z5A6
swissprot - D3YW09
Ensembl - ENSMUSG00000020211
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3a2ENSDARG00000021107Danio rerio
 SF3A2ENSGALG00000021679Gallus gallus
 SF3A2ENSG00000104897Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR031781  SF3A2 domain
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000002129 Sf3a1 / Q8K4Z5 / Splicing factor 3A subunit 1 / Q15459*  / complex
 ENSMUSG00000028902 Sf3a3 / Q9D554 / splicing factor 3a, subunit 3 / Q12874*  / complex






 

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contact: otassy@igbmc.fr