ENSG00000104897


Homo sapiens

Features
Gene ID: ENSG00000104897
  
Biological name :SF3A2
  
Synonyms : Q15428 / SF3A2 / splicing factor 3a subunit 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.3
Gene start: 2236504
Gene end: 2248679
  
Corresponding Affymetrix probe sets: 209381_x_at (Human Genome U133 Plus 2.0 Array)   37462_i_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000221494
Ensembl peptide - ENSP00000466634
NCBI entrez gene - 8175     See in Manteia.
OMIM - 600796
RefSeq - NM_007165
RefSeq Peptide - NP_009096
swissprot - Q15428
swissprot - K7EMT0
Ensembl - ENSG00000104897
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3a2ENSDARG00000021107Danio rerio
 SF3A2ENSGALG00000021679Gallus gallus
 Sf3a2ENSMUSG00000020211Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR031781  SF3A2 domain
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000389 mRNA 3"-splice site recognition TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000099995 SF3A1 / Q15459 / splicing factor 3a subunit 1  / complex
 ENSG00000183431 SF3A3 / Q12874 / splicing factor 3a subunit 3  / complex






 

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