ENSMUSG00000028902


Mus musculus

Features
Gene ID: ENSMUSG00000028902
  
Biological name :Sf3a3
  
Synonyms : Q9D554 / Sf3a3 / splicing factor 3a, subunit 3
  
Possible biological names infered from orthology : Q12874
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 124714776
Gene end: 124732460
  
Corresponding Affymetrix probe sets: 10507914 (MoGene1.0st)   1423811_at (Mouse Genome 430 2.0 Array)   1432488_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030734
NCBI entrez gene - 75062     See in Manteia.
MGI - MGI:1922312
RefSeq - NM_029157
RefSeq Peptide - NP_083433
swissprot - Q58E59
swissprot - Q9D554
Ensembl - ENSMUSG00000028902
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3a3ENSDARG00000100114Danio rerio
 SF3A3ENSGALG00000001540Gallus gallus
 SF3A3ENSG00000183431Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sde2 / Q8K1J5 / Replication stress response regulator SDE2 / Q6IQ49* / SDE2 telomere maintenance homolog*ENSMUSG0000003880610


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR021966  Splicing factor SF3a60 binding domain
 IPR024598  Domain of unknown function DUF3449
 IPR031774  SF3A3 domain
 IPR031776  Splicing factor 3A subunit 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing ISO
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000002129 Sf3a1 / Q8K4Z5 / Splicing factor 3A subunit 1 / Q15459*  / complex
 ENSMUSG00000020211 Sf3a2 / splicing factor 3a, subunit 2 / Q15428*  / complex






 

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contact: otassy@igbmc.fr