ENSDARG00000042232


Danio rerio

Features
Gene ID: ENSDARG00000042232
  
Biological name :specc1lb
  
Synonyms : specc1lb / sperm antigen with calponin homology and coiled-coil domains 1-like b
  
Possible biological names infered from orthology : Q2KN98 / Q69YQ0 / SPECC1L / SPECC1L-ADORA2A / SPECC1L-ADORA2A readthrough (NMD candidate) / sperm antigen with calponin homology and coiled-coil domains 1 like
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 13233377
Gene end: 13284660
  
Corresponding Affymetrix probe sets: Dr.22071.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000122137
Ensembl peptide - ENSDARP00000115314
Ensembl peptide - ENSDARP00000155928
NCBI entrez gene - 555467     See in Manteia.
swissprot - E7FG55
swissprot - F1Q867
ZFIN ID - ZDB-GENE-090423-1
Ensembl - ENSDARG00000042232
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPECC1LENSGALG00000006648Gallus gallus
 Q69YQ0ENSG00000100014Homo sapiens
 SPECC1L-ADORA2AENSG00000258555Homo sapiens
 Q2KN98ENSMUSG00000033444Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q2KN93 / specc1la / sperm antigen with calponin homology and coiled-coil domains 1-like a / Q2KN98* / Q69YQ0* / SPECC1L* / SPECC1L-ADORA2A* / SPECC1L-ADORA2A readthrough (NMD candidate)* / ...ENSDARG0000000671968
specc1 / sperm antigen with calponin homology and coiled-coil domains 1 / Q5M775* / Q5SXY1*ENSDARG0000002948036
si:ch211-195o20.7ENSDARG0000008922111
F1QH17 / mical3a / microtubule associated monooxygenase, calponin and LIM domain containing 3a / MICAL3* / Q7RTP6* / Q8CJ19* / [F-actin]-monooxygenase MICAL3 * / microtubule associated mono...ENSDARG0000009701710
F1QWK4 / mical3b / microtubule associated monooxygenase, calponin and LIM domain containing 3b / MICAL3* / Q7RTP6* / Q8CJ19* / [F-actin]-monooxygenase MICAL3 * / microtubule associated mono...ENSDARG000000947329
F1RA39 / mical2b / microtubule associated monooxygenase, calponin and LIM domain containing 2b / Q8BML1* / MICAL2* / O94851* / Q6ZW33* / [F-actin]-monooxygenase MICAL2 * / microtubule assoc...ENSDARG000000203959
E7F9T0 / mical1 / microtubule associated monooxygenase, calponin and LIM domain containing 1 / Q8TDZ2* / Q8VDP3* / Mus musculus microtubule associated monooxygenase, calponin and LIM domain...ENSDARG000000118097
ehbp1l1a / EH domain binding protein 1-like 1a / Q8N3D4* / EHBP1L1* / EH domain binding protein 1 like 1* / EH domain-binding protein 1-like protein 1 isoform C *ENSDARG000000573536
mical2a / microtubule associated monooxygenase, calponin and LIM domain containing 2a / Q6ZW33* / MICAL2* / O94851* / microtubule associated monooxygenase, calponin and LIM domain containing 2*ENSDARG000000756086
ehbp1 / EH domain binding protein 1 / Q69ZW3* / Q8NDI1*ENSDARG000000436436
ehbp1l1b / EH domain binding protein 1-like 1b / Q8N3D4* / EHBP1L1* / EH domain binding protein 1 like 1* / EH domain-binding protein 1-like protein 1 isoform C *ENSDARG000000798956
micall2b / mical-like 2b / Q3TN34* / Q8IY33* / MICALL2* / MICAL like 2* / MICAL-like protein 2 *ENSDARG000000178345
micall1b.2 / MICAL like 1b, duplicate 2ENSDARG000000870164
micall2a / mical-like 2a / Q3TN34* / Q8IY33* / MICALL2* / MICAL like 2* / MICAL-like protein 2 *ENSDARG000001023664
micall1a / MICAL-like 1aENSDARG000000798114
mical3a / microtubule associated monooxygenase, calponin and LIM domain containing 3a / Q9D5U9* / Micalcl* / AC132392.1* / MICAL C-terminal-like protein *ENSDARG000000219793
smtnb / smoothelin bENSDARG000000594423
smtnl / smoothelin, like / SMTNL2* / Q2TAL5* / Q8CI12* / smoothelin like 2* / Smoothelin-like protein 2 *ENSDARG000000556322
smtna / smoothelin a / A8MU46* / Q99LM3* / SMTNL1* / smoothelin like 1* / Smoothelin-like protein 1 *ENSDARG000000746521
smtnl1 / smoothelin-like 1ENSDARG000000412571


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0097095 frontonasal suture morphogenesis IMP
 biological_processGO:1904888 cranial skeletal system development IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage split , abnormal
ethmoid cartilage morphology , abnormal
Show

 ZFA:0005509 palate palate morphology , abnormal
palate shortened , abnormal
Show

 ZFA:0009003 cranial neural crest cell cranial neural crest cell mislocalised , abnormal
Show

 ZFA:0009165 neural crest cell neural crest cell cell proliferation decreased occurrence , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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