ENSG00000100014


Homo sapiens

Features
Gene ID: ENSG00000100014
  
Biological name :SPECC1L
  
Synonyms : Q69YQ0 / SPECC1L / sperm antigen with calponin homology and coiled-coil domains 1 like
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q11.23
Gene start: 24270817
Gene end: 24417740
  
Corresponding Affymetrix probe sets: 212480_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000393363
Ensembl peptide - ENSP00000439633
Ensembl peptide - ENSP00000414354
Ensembl peptide - ENSP00000405671
Ensembl peptide - ENSP00000325785
NCBI entrez gene - 23384     See in Manteia.
OMIM - 614140
RefSeq - NM_001145468
RefSeq - NM_001254732
RefSeq - NM_015330
RefSeq Peptide - NP_001138940
RefSeq Peptide - NP_056145
RefSeq Peptide - NP_001241661
swissprot - Q69YQ0
swissprot - C9J8U1
swissprot - C9JLY8
Ensembl - ENSG00000100014
  
Related genetic diseases (OMIM): 145410 - Opitz GBBB syndrome, type II, 145410
  600251 - ?Facial clefting, oblique, 1, 600251
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q2KN93ENSDARG00000006719Danio rerio
 specc1lbENSDARG00000042232Danio rerio
 SPECC1LENSGALG00000006648Gallus gallus
 Q2KN98ENSMUSG00000033444Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPECC1L-ADORA2A / SPECC1L-ADORA2A readthrough (NMD candidate)ENSG0000025855580
Q5M775 / SPECC1 / sperm antigen with calponin homology and coiled-coil domains 1ENSG0000012848739
MICAL3 / Q7RTP6 / microtubule associated monooxygenase, calponin and LIM domain containing 3ENSG0000024315612
MICAL1 / Q8TDZ2 / microtubule associated monooxygenase, calponin and LIM domain containing 1ENSG0000013559610
MICAL2 / O94851 / Q6ZW33 / microtubule associated monooxygenase, calponin and LIM domain containing 2ENSG000001338169
Q8N3D4 / EHBP1L1 / EH domain binding protein 1 like 1ENSG000001734428
Q8N3F8 / MICALL1 / MICAL like 1ENSG000001001397
EHBP1 / Q8NDI1 / EH domain binding protein 1ENSG000001155047
Q8IY33 / MICALL2 / MICAL like 2ENSG000001648776
SMTN / P53814 / smoothelinENSG000001839635
Q2TAL5 / SMTNL2 / smoothelin like 2ENSG000001881763
A8MU46 / SMTNL1 / smoothelin like 1ENSG000002148723


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007155 cell adhesion IDA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
Show

 HP:0000049 Shawl scrotum "A condition in which the upper scrotal skin rises over the base of the penis." [HPO:curators]
Show

 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
Show

 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
Show

 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
Show

 HP:0000200 Short lingual frenulum "The presence of an abnormally short lingual frenulum." [HPO:probinson]
Show

 HP:0000202 Cleft lip/palate 
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000219 Thin upper lip 
Show

 HP:0000232 Everted lower lip 
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
Show

 HP:0000267 Cranial asymmetry "Asymmetry of the bones of the skull." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000349 Widow s peak 
Show

 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000520 Proptosis 
Show

 HP:0000574 Thick eyebrows 
Show

 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000924 Abnormality of the musculoskeletal system "An abnormality of the musculoskeletal system including one or more abnormalities affecting bones, muscles, cartilage, tendons, ligaments, joints, and other connective tissue." [HPO:curators]
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001320 Cerebellar vermis hypoplasia 
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001539 Omphalocele 
Show

 HP:0001540 Diastasis recti 
Show

 HP:0001612 Weak cry 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
Show

 HP:0001831 Brachydactyly (feet) 
Show

 HP:0002006 Facial cleft 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
Show

 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
Show

 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002389 Cavum septum pellucidum "If the two laminae of the septum pellucidum are not fused then a fluid-filled space or cavum is present. The cavum septum pellucidum is present at birth but usually obliterates by the age of 3 to 6 months. It is up to 1cm in width and the walls are parallel. It is an enclosed space and is not part of the ventricular system or connected with the subarachnoid space." [HPO:curators]
Show

 HP:0002553 Arched eyebrows 
Show

 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
Show

 HP:0002835 Aspiration 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003593 Early onset 
Show

 HP:0003745 Sporadic 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006191 Deep palmar creases "An increased depth of the palmar creases." [HPO:curators]
Show

 HP:0006288 Premature eruption of teeth 
Show

 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
Show

 HP:0008751 Laryngeal cleft 
Show

 HP:0010458 Female pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In female pseudohermaphroditism, the genotype is female (XX) and the gonads are ovaries, but the external genitalia are virilized." [HPO:curators]
Show

 HP:0010751 Chin dimple "A persistent midline depression of the skin over the fat pad of the chin." [pmid:19125436]
Show

 HP:0011039 Abnormality of the helix "An abnormality of the `helix` (FMA:60992)." [HPO:probinson]
Show

 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
Show

 HP:0011467 Absent gallbladder "A developmental defect in which the gallbladder fails to form." [DDD:hfirth]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr