ENSDARG00000042525


Danio rerio

Features
Gene ID: ENSDARG00000042525
  
Biological name :ebf2
  
Synonyms : early B cell factor 2 / ebf2
  
Possible biological names infered from orthology : O08792 / Q9HAK2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 67390115
Gene end: 67441054
  
Corresponding Affymetrix probe sets: Dr.611.1.S1_at (Zebrafish Array)   NM_131418_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000152354
Ensembl peptide - ENSDARP00000009986
NCBI entrez gene - 30692     See in Manteia.
RefSeq - NM_131418
RefSeq - XM_005165618
RefSeq Peptide - NP_571493
swissprot - A2BIQ0
ZFIN ID - ZDB-GENE-990715-11
Ensembl - ENSDARG00000042525
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EBF2ENSGALG00000000242Gallus gallus
 EBF2ENSG00000221818Homo sapiens
 Ebf2ENSMUSG00000022053Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ebf1b / early B cell factor 1b / EBF1* / Q07802* / Q9UH73* / early B cell factor 1*ENSDARG0000006919670
ebf3a / early B cell factor 3a / EBF3* / O08791* / Q9H4W6* / early B cell factor 3*ENSDARG0000010024470
ebf1a / ebf3a / early B cell factor 3a / EBF1* / Q9UH73* / Q07802* / early B cell factor 1*ENSDARG0000009984970
ebf3b / early B cell factor 3bENSDARG0000009128756
si:ch211-51e8.2 / EBF1 (1 of many) / EBF1* / Q07802* / Q9UH73* / early B cell factor 1*ENSDARG0000009263524


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR003523  Transcription factor COE
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR018350  Transcription factor COE, conserved site
 IPR032200  Transcription factor COE, DNA-binding domain
 IPR032201  Transcription factor COE, helix-loop-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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