ENSDARG00000100244


Danio rerio

Features
Gene ID: ENSDARG00000100244
  
Biological name :ebf3a
  
Synonyms : early B cell factor 3a / ebf3a
  
Possible biological names infered from orthology : early B cell factor 3 / EBF3 / O08791 / Q9H4W6
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 42436328
Gene end: 42579702
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000133654
Ensembl peptide - ENSDARP00000143395
Ensembl peptide - ENSDARP00000137939
NCBI entrez gene - 567751     See in Manteia.
RefSeq - XM_005156411
RefSeq - XM_009306903
RefSeq - XM_009306904
swissprot - A1L2E2
swissprot - A0A286Y8W0
swissprot - A0A0R4IJ52
ZFIN ID - ZDB-GENE-070112-292
Ensembl - ENSDARG00000100244
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EBF3ENSGALG00000010461Gallus gallus
 EBF3ENSG00000108001Homo sapiens
 Ebf3ENSMUSG00000010476Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ebf1a / ebf3a / early B cell factor 3a / EBF1* / Q9UH73* / Q07802* / early B cell factor 1*ENSDARG0000009984987
ebf1b / early B cell factor 1b / EBF1* / Q07802* / Q9UH73* / early B cell factor 1*ENSDARG0000006919685
ebf2 / early B cell factor 2 / O08792* / Q9HAK2*ENSDARG0000004252574
ebf3b / early B cell factor 3bENSDARG0000009128766
si:ch211-51e8.2 / EBF1 (1 of many) / EBF1* / Q07802* / Q9UH73* / early B cell factor 1*ENSDARG0000009263529


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR003523  Transcription factor COE
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR018350  Transcription factor COE, conserved site
 IPR032200  Transcription factor COE, DNA-binding domain
 IPR032201  Transcription factor COE, helix-loop-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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