ENSDARG00000042833


Danio rerio

Features
Gene ID: ENSDARG00000042833
  
Biological name :rffl
  
Synonyms : rffl / ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
  
Possible biological names infered from orthology : AC004223.3 / E3 ubiquitin-protein ligase rififylin / Q6ZQM0 / Q8WZ73
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 4549240
Gene end: 4580763
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000003302
Ensembl peptide - ENSDARP00000129236
NCBI entrez gene - 405832     See in Manteia.
RefSeq - NM_212896
RefSeq Peptide - NP_998061
swissprot - F1QFN6
swissprot - X1WG81
ZFIN ID - ZDB-GENE-040426-2274
Ensembl - ENSDARG00000042833
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFFLENSGALG00000002225Gallus gallus
 AC004223.3ENSG00000267618Homo sapiens
 RFFLENSG00000092871Homo sapiens
 RfflENSMUSG00000020696Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:171740 / RFFL* / Q8WZ73* / Q6ZQM0* / AC004223.3* / E3 ubiquitin-protein ligase rififylin * / ring finger and FYVE like domain containing E3 ubiquitin protein ligase*ENSDARG0000005624445
rnf34b / ring finger protein 34b / RNF34* / Q969K3* / ring finger protein 34*ENSDARG0000005403644
rnf34a / ring finger protein 34a / RNF34* / Q969K3* / ring finger protein 34*ENSDARG0000003830042


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003034  SAP domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TP53 Degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr