ENSDARG00000042835


Danio rerio

Features
Gene ID: ENSDARG00000042835
  
Biological name :tfdp2
  
Synonyms : tfdp2 / transcription factor Dp-2
  
Possible biological names infered from orthology : Q14188
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 4421797
Gene end: 4528387
  
Corresponding Affymetrix probe sets: Dr.5424.1.A1_at (Zebrafish Array)   NM_198208_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000104652
Ensembl peptide - ENSDARP00000062867
Ensembl peptide - ENSDARP00000129833
Ensembl peptide - ENSDARP00000136462
NCBI entrez gene - 338204     See in Manteia.
RefSeq - NM_198208
RefSeq Peptide - NP_937851
swissprot - F1QC48
swissprot - A0A0R4IKL9
swissprot - F1R167
swissprot - X1WHW8
ZFIN ID - ZDB-GENE-030219-104
Ensembl - ENSDARG00000042835
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TFDP2ENSGALG00000025759Gallus gallus
 TFDP2ENSG00000114126Homo sapiens
 Tfdp2ENSMUSG00000032411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tfdp1a / transcription factor Dp-1, a / TFDP1* / TFDP3* / Q14186* / Q5H9I0* / Q08639* / transcription factor Dp-1* / transcription factor Dp family member 3*ENSDARG0000001929355
tfdp1b / transcription factor Dp-1, bENSDARG0000001630449


Protein motifs (from Interpro)
Interpro ID Name
 IPR003316  E2F/DP family, winged-helix DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014889  Transcription factor DP, C-terminal
 IPR015648  Transcription factor DP
 IPR028314  Transcription factor DP2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007049 cell cycle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Cyclin D associated events in G1
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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