ENSGALG00000025759


Gallus gallus

Features
Gene ID: ENSGALG00000025759
  
Biological name :TFDP2
  
Synonyms : TFDP2 / transcription factor Dp-2
  
Possible biological names infered from orthology : Q14188
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 10338213
Gene end: 10382351
  
Corresponding Affymetrix probe sets: GgaAffx.1795.1.S1_at (Chicken Array)   GgaAffx.1795.3.S1_s_at (Chicken Array)   GgaAffx.20326.1.S1_at (Chicken Array)   GgaAffx.20326.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046674
Ensembl peptide - ENSGALP00000055400
Ensembl peptide - ENSGALP00000041213
NCBI entrez gene - 424780     See in Manteia.
RefSeq - XM_015276882
RefSeq - XM_015276878
RefSeq - XM_015276879
RefSeq - XM_015276880
RefSeq - XM_015276881
RefSeq - NM_001184713
RefSeq - XM_015276877
RefSeq Peptide - NP_001171642
swissprot - A0A1D5PR78
swissprot - A0A1D5P1Y1
swissprot - R4GGP3
Ensembl - ENSGALG00000025759
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tfdp2ENSDARG00000042835Danio rerio
 TFDP2ENSG00000114126Homo sapiens
 Tfdp2ENSMUSG00000032411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TFDP1* / TFDP3* / Q5H9I0* / Q08639* / Q14186* / transcription factor Dp-1* / transcription factor Dp family member 3*ENSGALG0000001682348


Protein motifs (from Interpro)
Interpro ID Name
 IPR003316  E2F/DP family, winged-helix DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014889  Transcription factor DP, C-terminal
 IPR015648  Transcription factor DP
 IPR028314  Transcription factor DP2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Cyclin D associated events in G1
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003297 HDAC1 / P56517 / Histone deacetylase 1 / O09106* / Q13547* / Gm10093*  / complex / reaction
 ENSGALG00000036001 SMAD2Z / SMAD2* / Q62432* / Q15796* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / complex / reaction
 ENSGALG00000016454 E2F6 / E2F transcription factor 6 / O54917* / O75461* / Transcription factor E2F6 *  / complex / reaction
 ENSGALG00000012680 E2F3 / E2F transcription factor 3 / O00716* / O35261* / Transcription factor E2F3 *  / complex
 ENSGALG00000001722 E2F4 / E2F transcription factor 4 / Q16254* / Q8R0K9* / Transcription factor E2F4 *  / complex
 ENSGALG00000014184 SMAD2* / Q15796* / Q62432* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / reaction / complex
 ENSGALG00000038915 E2F5 / transcription factor E2F5 / Q15329* / Q61502* / E2F transcription factor 5*  / complex






 

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