ENSGALG00000016823


Gallus gallus

Features
Gene ID: ENSGALG00000016823
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Q08639 / Q14186 / Q5H9I0 / TFDP1 / TFDP3 / transcription factor Dp-1 / transcription factor Dp family member 3
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 137305540
Gene end: 137345808
  
Corresponding Affymetrix probe sets: Gga.3952.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027109
NCBI entrez gene - 418739     See in Manteia.
RefSeq - XM_015277902
RefSeq - XM_015277903
RefSeq - XM_015277904
RefSeq - XM_015277905
RefSeq - XM_004938530
swissprot - F1P3E8
Ensembl - ENSGALG00000016823
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tfdp1aENSDARG00000019293Danio rerio
 TFDP1ENSG00000198176Homo sapiens
 TFDP3ENSG00000183434Homo sapiens
 Tfdp1ENSMUSG00000038482Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TFDP2 / transcription factor Dp-2 / Q14188*ENSGALG0000002575959


Protein motifs (from Interpro)
Interpro ID Name
 IPR003316  E2F/DP family, winged-helix DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014889  Transcription factor DP, C-terminal
 IPR015648  Transcription factor DP
 IPR028313  Transcription factor DP1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0043276 anoikis IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0070345 negative regulation of fat cell proliferation IEA
 biological_processGO:2000278 regulation of DNA biosynthetic process IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Cyclin D associated events in G1
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003297 HDAC1 / P56517 / Histone deacetylase 1 / O09106* / Q13547* / Gm10093*  / complex / reaction
 ENSGALG00000016454 E2F6 / E2F transcription factor 6 / O54917* / O75461* / Transcription factor E2F6 *  / reaction / complex
 ENSGALG00000008230 PCGF6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *  / reaction / complex
 ENSGALG00000014184 SMAD2* / Q15796* / Q62432* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / reaction / complex
 ENSGALG00000043399 EZH2 / enhancer of zeste 2 polycomb repressive complex 2 subunit / Q15910* / Q61188* / Histone-lysine N-methyltransferase EZH2 *  / reaction / complex
 ENSGALG00000009540 YAF2 / YY1 associated factor 2 / Q8IY57* / Q99LW6*  / complex / reaction
 ENSGALG00000011976 L3MBTL2 / L3MBTL2, polycomb repressive complex 1 subunit / P59178* / Q969R5* / Lethal(3)malignant brain tumor-like protein 2 *  / reaction / complex
 ENSGALG00000036001 SMAD2Z / SMAD2* / Q62432* / Q15796* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / complex / reaction
 ENSGALG00000037219 RNF2 / ring finger protein 2 / Q99496* / Q9CQJ4* / E3 ubiquitin-protein ligase RING2 *  / complex / reaction
 ENSGALG00000012680 E2F3 / E2F transcription factor 3 / O00716* / O35261* / Transcription factor E2F3 *  / complex
 ENSGALG00000007169 EPC1 / enhancer of polycomb homolog 1 / Q8C9X6* / Q9H2F5*  / reaction / complex
 ENSGALG00000014060 EED / Q5ZKH3 / Polycomb protein EED / O75530* / Q921E6* / embryonic ectoderm development*  / complex / reaction
 ENSGALG00000011038 CBX3 / Q13185* / chromobox 3* / chromobox protein homolog 3 *  / complex / reaction
 ENSGALG00000038915 E2F5 / transcription factor E2F5 / Q15329* / Q61502* / E2F transcription factor 5*  / complex
 ENSGALG00000001722 E2F4 / E2F transcription factor 4 / Q16254* / Q8R0K9* / Transcription factor E2F4 *  / complex






 

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