ENSGALG00000011038


Gallus gallus

Features
Gene ID: ENSGALG00000011038
  
Biological name :CBX3
  
Synonyms : CBX3
  
Possible biological names infered from orthology : chromobox 3 / chromobox protein homolog 3 / Q13185
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 32252636
Gene end: 32265780
  
Corresponding Affymetrix probe sets: Gga.4062.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049962
Ensembl peptide - ENSGALP00000054854
Ensembl peptide - ENSGALP00000051340
Ensembl peptide - ENSGALP00000017958
NCBI entrez gene - 395355     See in Manteia.
RefSeq - XM_015281284
RefSeq - XM_015281285
RefSeq - XM_015281286
RefSeq - NM_204643
RefSeq Peptide - NP_989974
swissprot - O93481
swissprot - A0A1D5PEX8
swissprot - A0A1D5PPQ0
Ensembl - ENSGALG00000011038
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cbx3aENSDARG00000003860Danio rerio
 cbx3bENSDARG00000092158Danio rerio
 CBX3ENSG00000122565Homo sapiens
 Cbx3ENSMUSG00000029836Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CBX1 / chromobox 1 / P83916* / P83917* / Chromobox protein homolog 1 *ENSGALG0000003392670
CBX5 / chromobox 5 / P45973* / Q61686* / Mus musculus chromobox 5 (Cbx5), transcript variant 4, mRNA.*ENSGALG0000003685662


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR008251  Chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Chain Elongation
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000020078 H3F3C / histone H3.2 / H3.Y* / H3F3B* / H3F3A* / Q6NXT2* / P84243* / P84244* / Histone H3.3 * / H3 histone family member 3B* / H3 histone family member 3A* / H3 histone family member 3C* /...  / complex
 ENSGALG00000016454 E2F6 / E2F transcription factor 6 / O54917* / O75461* / Transcription factor E2F6 *  / complex / reaction
 ENSGALG00000008230 PCGF6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *  / complex / reaction
 ENSGALG00000009540 YAF2 / YY1 associated factor 2 / Q8IY57* / Q99LW6*  / complex / reaction
 ENSGALG00000037219 RNF2 / ring finger protein 2 / Q99496* / Q9CQJ4* / E3 ubiquitin-protein ligase RING2 *  / complex / reaction
 ENSGALG00000011976 L3MBTL2 / L3MBTL2, polycomb repressive complex 1 subunit / P59178* / Q969R5* / Lethal(3)malignant brain tumor-like protein 2 *  / complex / reaction
 ENSGALG00000016823 TFDP1* / TFDP3* / Q5H9I0* / Q08639* / Q14186* / transcription factor Dp-1* / transcription factor Dp family member 3*  / complex / reaction
 ENSGALG00000043062 P84229 / HIST2H3D / Histone H3.2 / Q71DI3* / histone cluster 2 H3 family member d*  / complex
 ENSGALG00000042491 P62801 / Histone H4   / complex






 

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