ENSGALG00000036856


Gallus gallus

Features
Gene ID: ENSGALG00000036856
  
Biological name :CBX5
  
Synonyms : CBX5 / chromobox 5
  
Possible biological names infered from orthology : Mus musculus chromobox 5 (Cbx5), transcript variant 4, mRNA. / P45973 / Q61686
  
Species: Gallus gallus
  
Chr. number: 33
Strand: -1
Band:
Gene start: 1153495
Gene end: 1155340
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000045707
Ensembl peptide - ENSGALP00000045711
NCBI entrez gene - 776802     See in Manteia.
RefSeq - XM_015300359
RefSeq - XM_015300360
RefSeq - XM_015300361
swissprot - A0A1D5NZ96
swissprot - A0A1D5NZ92
Ensembl - ENSGALG00000036856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cbx5ENSDARG00000061187Danio rerio
 CBX5ENSG00000094916Homo sapiens
 Cbx5ENSMUSG00000009575Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CBX1 / chromobox 1 / P83916* / P83917* / Chromobox protein homolog 1 *ENSGALG0000003392662
CBX3 / Q13185* / chromobox 3* / chromobox protein homolog 3 *ENSGALG0000001103860


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR008251  Chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005720 nuclear heterochromatin IEA
 cellular_componentGO:0005721 pericentric heterochromatin IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0010369 chromocenter IEA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0035097 histone methyltransferase complex IEA
 cellular_componentGO:1990904 ribonucleoprotein complex IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000020078 H3F3C / histone H3.2 / H3.Y* / H3F3B* / H3F3A* / Q6NXT2* / P84243* / P84244* / Histone H3.3 * / H3 histone family member 3B* / H3 histone family member 3A* / H3 histone family member 3C* /...  / reaction / complex
 ENSGALG00000043062 P84229 / HIST2H3D / Histone H3.2 / Q71DI3* / histone cluster 2 H3 family member d*  / complex / reaction






 

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