ENSDARG00000003860


Danio rerio

Features
Gene ID: ENSDARG00000003860
  
Biological name :cbx3a
  
Synonyms : cbx3a / chromobox homolog 3a (HP1 gamma homolog, Drosophila)
  
Possible biological names infered from orthology : CBX3 / chromobox 3 / chromobox protein homolog 3 / Q13185
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 18131512
Gene end: 18136410
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000009789
Ensembl peptide - ENSDARP00000145648
NCBI entrez gene - 751689     See in Manteia.
RefSeq - NM_001045402
RefSeq Peptide - NP_001038867
swissprot - F1QNF2
ZFIN ID - ZDB-GENE-030131-1158
Ensembl - ENSDARG00000003860
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX3ENSGALG00000011038Gallus gallus
 CBX3ENSG00000122565Homo sapiens
 Cbx3ENSMUSG00000029836Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx1b / chromobox homolog 1b (HP1 beta homolog Drosophila) / CBX1* / P83917* / P83916* / chromobox 1* / Chromobox protein homolog 1 *ENSDARG0000005444262
cbx1a / chromobox homolog 1a (HP1 beta homolog Drosophila) / CBX1* / P83917* / P83916* / chromobox 1* / Chromobox protein homolog 1 *ENSDARG0000000418961
cbx5 / chromobox homolog 5 (HP1 alpha homolog, Drosophila) / P45973* / Q61686* / chromobox 5* / Mus musculus chromobox 5 (Cbx5), transcript variant 4, mRNA.*ENSDARG0000006118760
cbx3b / chromobox homolog 3b / CBX3* / Q13185* / chromobox 3* / chromobox protein homolog 3 *ENSDARG0000009215850


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR008251  Chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Chain Elongation
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000010381 rnf2 / Q803I4 / ring finger protein 2 / Q99496* / Q9CQJ4* / E3 ubiquitin-protein ligase RING2 *  / reaction / complex
 ENSDARG00000069681 pcgf6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *  / complex / reaction
 ENSDARG00000015966 yaf2 / YY1 associated factor 2 / Q8IY57* / Q99LW6*  / complex / reaction
 ENSDARG00000056079 l3mbtl2 / l(3)mbt-like 2 (Drosophila) / P59178* / Q969R5* / L3MBTL2, polycomb repressive complex 1 subunit* / Lethal(3)malignant brain tumor-like protein 2 *  / complex / reaction
 ENSDARG00000008119 si:ch211-195d17.2 / E2F6* / O54917* / O75461* / E2F transcription factor 6* / Transcription factor E2F6 *  / reaction / complex
 ENSDARG00000024844 max / myc associated factor X / P61244* / Max protein*  / reaction / complex
 ENSDARG00000019293 tfdp1a / transcription factor Dp-1, a / TFDP1* / TFDP3* / Q14186* / Q5H9I0* / Q08639* / transcription factor Dp-1* / transcription factor Dp family member 3*  / complex / reaction
 ENSDARG00000068436 Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*  / complex
 ENSDARG00000105345 zgc:173552  / complex
 ENSDARG00000105359 Q4QRF4 / FP325123.1 / Histone H3.2   / complex






 

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