ENSDARG00000004189


Danio rerio

Features
Gene ID: ENSDARG00000004189
  
Biological name :cbx1a
  
Synonyms : cbx1a / chromobox homolog 1a (HP1 beta homolog Drosophila)
  
Possible biological names infered from orthology : CBX1 / chromobox 1 / Chromobox protein homolog 1 / P83916 / P83917
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 24050043
Gene end: 24071582
  
Corresponding Affymetrix probe sets: Dr.7662.1.S1_at (Zebrafish Array)   NM_199746_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125801
Ensembl peptide - ENSDARP00000147866
Ensembl peptide - ENSDARP00000118656
NCBI entrez gene - 326746     See in Manteia.
RefSeq - NM_199746
RefSeq Peptide - NP_956040
swissprot - I3ISC8
swissprot - F1QM86
swissprot - Q7ZVR4
ZFIN ID - ZDB-GENE-030131-4945
Ensembl - ENSDARG00000004189
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX1ENSGALG00000033926Gallus gallus
 CBX1ENSG00000108468Homo sapiens
 Cbx1ENSMUSG00000018666Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx1b / chromobox homolog 1b (HP1 beta homolog Drosophila) / CBX1* / P83917* / P83916* / chromobox 1* / Chromobox protein homolog 1 *ENSDARG0000005444274
cbx5 / chromobox homolog 5 (HP1 alpha homolog, Drosophila) / P45973* / Q61686* / chromobox 5* / Mus musculus chromobox 5 (Cbx5), transcript variant 4, mRNA.*ENSDARG0000006118752
cbx3a / chromobox homolog 3a (HP1 gamma homolog, Drosophila) / CBX3* / Q13185* / chromobox 3*ENSDARG0000000386051
cbx3b / chromobox homolog 3b / CBX3* / Q13185* / chromobox 3* / chromobox protein homolog 3 *ENSDARG0000009215837


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR008251  Chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr