ENSDARG00000069681


Danio rerio

Features
Gene ID: ENSDARG00000069681
  
Biological name :pcgf6
  
Synonyms : pcgf6 / polycomb group ring finger 6
  
Possible biological names infered from orthology : Polycomb group RING finger protein 6 / Q99NA9 / Q9BYE7
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 28682614
Gene end: 28689717
  
Corresponding Affymetrix probe sets: Dr.15074.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092355
Ensembl peptide - ENSDARP00000122785
NCBI entrez gene - 555238     See in Manteia.
RefSeq - NM_001089369
RefSeq Peptide - NP_001082838
swissprot - A2ATX4
swissprot - A2ATX3
ZFIN ID - ZDB-GENE-060526-178
Ensembl - ENSDARG00000069681
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCGF6ENSGALG00000008230Gallus gallus
 PCGF6ENSG00000156374Homo sapiens
 Pcgf6ENSMUSG00000025050Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcgf1 / polycomb group ring finger 1 / Q8R023* / Q9BSM1* / Polycomb group RING finger protein 1 *ENSDARG0000000124930
pcgf5a / B3DK16 / polycomb group ring finger 5a / PCGF5* / Q86SE9* / Q3UK78* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000007100727
Q1JPS1 / pcgf5b / polycomb group ring finger 5b / PCGF5* / Q3UK78* / Q86SE9* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000005238826
bmi1a / bmi1 polycomb ring finger oncogene 1a / BMI1* / P35226* / P25916* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polycomb ring finger*ENSDARG0000000601024
bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...ENSDARG0000001307623


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0031519 PcG protein complex IEA
 cellular_componentGO:0035102 PRC1 complex IEA


Pathways (from Reactome)
Pathway description
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003860 cbx3a / chromobox homolog 3a (HP1 gamma homolog, Drosophila) / CBX3* / Q13185* / chromobox 3*  / complex / reaction
 ENSDARG00000008119 si:ch211-195d17.2 / E2F6* / O54917* / O75461* / E2F transcription factor 6* / Transcription factor E2F6 *  / reaction / complex
 ENSDARG00000024844 max / myc associated factor X / P61244* / Max protein*  / complex / reaction
 ENSDARG00000015966 yaf2 / YY1 associated factor 2 / Q8IY57* / Q99LW6*  / complex
 ENSDARG00000056079 l3mbtl2 / l(3)mbt-like 2 (Drosophila) / P59178* / Q969R5* / L3MBTL2, polycomb repressive complex 1 subunit* / Lethal(3)malignant brain tumor-like protein 2 *  / complex
 ENSDARG00000019293 tfdp1a / transcription factor Dp-1, a / TFDP1* / TFDP3* / Q14186* / Q5H9I0* / Q08639* / transcription factor Dp-1* / transcription factor Dp family member 3*  / complex / reaction
 ENSDARG00000010381 rnf2 / Q803I4 / ring finger protein 2 / Q99496* / Q9CQJ4* / E3 ubiquitin-protein ligase RING2 *  / complex
 ENSDARG00000092158 cbx3b / chromobox homolog 3b / CBX3* / Q13185* / chromobox 3* / chromobox protein homolog 3 *  / complex / reaction






 

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