ENSDARG00000052388


Danio rerio

Features
Gene ID: ENSDARG00000052388
  
Biological name :pcgf5b
  
Synonyms : pcgf5b / polycomb group ring finger 5b / Q1JPS1
  
Possible biological names infered from orthology : PCGF5 / polycomb group ring finger 5 / Polycomb group RING finger protein 5 / Q3UK78 / Q86SE9
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 16405598
Gene end: 16435150
  
Corresponding Affymetrix probe sets: Dr.19077.1.A1_at (Zebrafish Array)   Dr.5795.1.A1_at (Zebrafish Array)   NM_001045235_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000080646
Ensembl peptide - ENSDARP00000127000
NCBI entrez gene - 692252     See in Manteia.
RefSeq - NM_001045235
RefSeq Peptide - NP_001038700
swissprot - Q1JPS1
swissprot - R4GET7
ZFIN ID - ZDB-GENE-060512-34
Ensembl - ENSDARG00000052388
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCGF5ENSGALG00000006502Gallus gallus
 PCGF5ENSG00000180628Homo sapiens
 Pcgf5ENSMUSG00000024805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcgf5a / B3DK16 / polycomb group ring finger 5a / PCGF5* / Q86SE9* / Q3UK78* / polycomb group ring finger 5* / Polycomb group RING finger protein 5 *ENSDARG0000007100781
pcgf1 / polycomb group ring finger 1 / Q8R023* / Q9BSM1* / Polycomb group RING finger protein 1 *ENSDARG0000000124934
pcgf6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *ENSDARG0000006968131
bmi1a / bmi1 polycomb ring finger oncogene 1a / BMI1* / P35226* / P25916* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polycomb ring finger*ENSDARG0000000601028
bmi1b / Q7T3E6 / bmi1 polycomb ring finger oncogene 1b / BMI1* / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / Polycomb complex protein BMI-1 * / BMI1 proto-oncogene, polyco...ENSDARG0000001307628


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032443  RAWUL domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0031519 PcG protein complex ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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