ENSGALG00000006502


Gallus gallus

Features
Gene ID: ENSGALG00000006502
  
Biological name :PCGF5
  
Synonyms : PCGF5 / polycomb group ring finger 5
  
Possible biological names infered from orthology : Polycomb group RING finger protein 5 / Q3UK78 / Q86SE9
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 19720931
Gene end: 19745244
  
Corresponding Affymetrix probe sets: Gga.14951.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010493
NCBI entrez gene - 423796     See in Manteia.
RefSeq - XM_015288398
RefSeq - NM_001277361
RefSeq - XM_015288396
RefSeq - XM_015288397
RefSeq Peptide - NP_001264290
swissprot - E1BYN8
Ensembl - ENSGALG00000006502
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 B3DK16ENSDARG00000071007Danio rerio
 pcgf5bENSDARG00000052388Danio rerio
 PCGF5ENSG00000180628Homo sapiens
 Pcgf5ENSMUSG00000024805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCGF3 / polycomb group ring finger 3 / Q3KNV8* / Q8BTQ0* / Polycomb group RING finger protein 3 *ENSGALG0000001533343
PCGF6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *ENSGALG0000000823032
PCGF2* / P23798* / P35227* / polycomb group ring finger 2* / Polycomb group RING finger protein 2 *ENSGALG0000004050129
PCGF2 / P23798* / P35227* / polycomb group ring finger 2* / Polycomb group RING finger protein 2 *ENSGALG0000001881529
BMI1 / Q5SDR3 / Polycomb complex protein BMI-1 / P25916* / P35226* / COMMD3-BMI1* / COMMD3-BMI1 readthrough* / BMI1 proto-oncogene, polycomb ring finger*ENSGALG0000004126729


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032443  RAWUL domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0036353 histone H2A-K119 monoubiquitination IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060819 inactivation of X chromosome by genetic imprinting IEA
 cellular_componentGO:0000805 X chromosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0031519 PcG protein complex IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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