ENSDARG00000105345


Danio rerio

Features
Gene ID: ENSDARG00000105345
  
Biological name :zgc:173552
  
Synonyms : zgc:173552
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 6429632
Gene end: 6430101
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136534
NCBI entrez gene - 103911341     See in Manteia.
NCBI entrez gene - 108190746     See in Manteia.
NCBI entrez gene - 108190747     See in Manteia.
NCBI entrez gene - 794406     See in Manteia.
NCBI entrez gene - 103909889     See in Manteia.
RefSeq - XM_009302909
RefSeq Peptide - NP_001104686
swissprot - A8KBJ5
ZFIN ID - ZDB-GENE-080220-24
Ensembl - ENSDARG00000105345
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:173552ENSDARG00000051737100
zgc:173552ENSDARG00000111396100
zgc:173552ENSDARG00000110909100
zgc:173552ENSDARG00000112175100
zgc:173552ENSDARG00000112131100
zgc:173552ENSDARG00000114334100
si:dkey-23a13.21ENSDARG0000010550899
Q4QRF4 / CU457819.3 / Histone H3.2 / Q71DI3* / HIST2H3C* / histone cluster 2 H3 family member c*ENSDARG0000010541899
FQ312024.1ENSDARG0000011437099
CR762436.2 / Q71DI3* / HIST2H3D* / histone cluster 2 H3 family member d*ENSDARG0000011296799
CR762436.1 / P84228* / Hist2h3c1* / Histone H3.2 *ENSDARG0000011237599
CU302436.5 / P84228* / Hist1h3d* / Hist1h3f* / Histone H3.2 *ENSDARG0000011450099
Q4QRF4 / CU457819.4 / Histone H3.2 ENSDARG0000010545999
Q4QRF4 / hist2h3c / histone cluster 2, H3cENSDARG0000009415499
Q4QRF4 / CU459186.2 / Histone H3.2 ENSDARG0000010172099
CR354435.5 / P84228* / Hist2h3c2* / Histone H3.2 *ENSDARG0000011416999
Q4QRF4 / CU459186.3 / Histone H3.2 ENSDARG0000010381999
Q4QRF4 / CU459186.1 / Histone H3.2 ENSDARG0000009897099
HIST2H3C / zgc:173552 / Q71DI3* / histone cluster 2 H3 family member c*ENSDARG0000011564499
Q4QRF4 / FP325123.2 / Histone H3.2 / P04908* / P84228* / Hist1h3e* / HIST1H2AB* / HIST1H2AE* / histone cluster 1 H2A family member e* / histone cluster 1 H2A family member b*ENSDARG0000010548499


Protein motifs (from Interpro)
Interpro ID Name
 IPR000164  Histone H3/CENP-A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IBA
 cellular_componentGO:0000786 nucleosome IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007241 mycb / Q7ZVS9 / MYC proto-oncogene, bHLH transcription factor b / MYC* / Bmyc* / P01106* / P01108* / Q6P8Z1* / Protein B-Myc * / myelocytomatosis oncogene* / MYC proto-oncogene, bHLH transc...  / complex
 ENSDARG00000030756 dnmt1 / DNA (cytosine-5-)-methyltransferase 1 / P26358* / DNA methyltransferase 1*  / reaction / complex
 ENSDARG00000004111 esr1 / estrogen receptor 1 / P03372* / P19785* / Estrogen receptor *  / complex / reaction
 ENSDARG00000045836 mapk11 / mitogen-activated protein kinase 11 / Q15759* / Q9WUI1*  / reaction
 ENSDARG00000026799 Q6DGD3 / suv39h1a / suppressor of variegation 3-9 homolog 1a / O54864* / O43463* / SUV39H1* / suppressor of variegation 3-9 1* / suppressor of variegation 3-9 homolog 1*  / complex / reaction
 ENSDARG00000028721 mapk14b / mitogen-activated protein kinase 14b / Q16539* / MAPK14* / P47811* / mitogen-activated protein kinase 14*  / reaction
 ENSDARG00000000857 Q9DGE2 / mapk14a / mitogen-activated protein kinase 14a / P47811* / Q16539* / MAPK14* / mitogen-activated protein kinase 14*  / reaction
 ENSDARG00000015427 hdac1 / histone deacetylase 1 / O09106* / Q13547* / Gm10093*  / complex
 ENSDARG00000059812 sin3ab / SIN3 transcription regulator family member Ab / SIN3A* / Q96ST3* / Q60520* / SIN3 transcription regulator family member A* / Mus musculus transcriptional regulator, SIN3A (yeast) (...  / complex
 ENSDARG00000055753 suv39h1b / suppressor of variegation 3-9 homolog 1b / O54864* / O43463* / SUV39H1* / suppressor of variegation 3-9 1* / suppressor of variegation 3-9 homolog 1*  / reaction / complex
 ENSDARG00000036791 dnmt3bb.1 / DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1 / Q9UBC3* / DNMT3B* / Dnmt3c* / O88509* / DNA methyltransferase 3 beta* / DNA (cytosine-5)-methyltransferase 3B *  / complex / reaction
 ENSDARG00000079716 sin3aa / SIN3 transcription regulator family member Aa / SIN3A* / Q96ST3* / Q60520* / SIN3 transcription regulator family member A* / Mus musculus transcriptional regulator, SIN3A (yeast) (...  / complex
 ENSDARG00000077404 ncoa3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / complex
 ENSDARG00000069706 prmt6 / protein arginine methyltransferase 6 / Q96LA8*  / complex
 ENSDARG00000068064 sirt1 / sirtuin 1 / Q96EB6*  / reaction / complex
 ENSDARG00000068436 Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*  / complex
 ENSDARG00000067976 ar / androgen receptor / P10275* / P19091*  / complex / reaction
 ENSDARG00000088087 kdm6ba / lysine (K)-specific demethylase 6B, a / KDM6B* / O15054* / Q5NCY0* / lysine demethylase 6B* / Lysine-specific demethylase 6B *  / reaction
 ENSDARG00000088123 znf217 / zinc finger protein 217 / O75362*  / complex
 ENSDARG00000087646 runx1 / runt-related transcription factor 1 / Q01196*  / complex
 ENSDARG00000098924 suz12b / B0R1D5 / SUZ12 polycomb repressive complex 2b subunit / SUZ12* / Q80U70* / Q15022* / Polycomb protein Suz12 * / SUZ12 polycomb repressive complex 2 subunit*  / complex / reaction
 ENSDARG00000104734 kat2a / K(lysine) acetyltransferase 2A / Q92830* / Q9JHD2* / lysine acetyltransferase 2A*  / reaction
 ENSDARG00000099640 eed / Q566T0 / embryonic ectoderm development / O75530* / Q921E6* / Polycomb protein EED *  / reaction / complex
 ENSDARG00000099675 kdm4b / lysine (K)-specific demethylase 4B / O94953* / Q91VY5* / lysine demethylase 4B* / Lysine-specific demethylase 4B *  / reaction / complex
 ENSDARG00000092158 cbx3b / chromobox homolog 3b / CBX3* / Q13185* / chromobox 3* / chromobox protein homolog 3 *  / complex
 ENSDARG00000092644 ago1 / argonaute RISC catalytic component 1 / Q8CJG1* / Q9UL18* / Protein argonaute-1 * / argonaute 1, RISC catalytic component*  / complex / reaction
 ENSDARG00000105359 Q4QRF4 / FP325123.1 / Histone H3.2   / complex
 ENSDARG00000003860 cbx3a / chromobox homolog 3a (HP1 gamma homolog, Drosophila) / CBX3* / Q13185* / chromobox 3*  / complex
 ENSDARG00000027978 yy1b / YY1 transcription factor b / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000071652 rrp8 / ribosomal RNA processing 8, methyltransferase, homolog (yeast) / O43159* / Q9DB85* / ribosomal RNA processing 8* / Ribosomal RNA-processing protein 8 *  / complex / reaction
 ENSDARG00000042796 yy1a / YY1 transcription factor a / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000105345 zgc:173552  / complex
 ENSDARG00000100940 nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*  / complex






 

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