ENSDARG00000088123


Danio rerio

Features
Gene ID: ENSDARG00000088123
  
Biological name :znf217
  
Synonyms : zinc finger protein 217 / znf217
  
Possible biological names infered from orthology : O75362 / Zfp217
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 38245610
Gene end: 38263780
  
Corresponding Affymetrix probe sets: Dr.17834.1.A1_at (Zebrafish Array)   Dr.25858.1.A1_at (Zebrafish Array)   Dr.26396.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000144789
Ensembl peptide - ENSDARP00000155959
Ensembl peptide - ENSDARP00000111676
NCBI entrez gene - 100537540     See in Manteia.
RefSeq - NM_001351640
RefSeq - XM_003201223
RefSeq Peptide - NP_001338569
swissprot - E7EZ61
ZFIN ID - ZDB-GENE-030131-2542
Ensembl - ENSDARG00000088123
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000040546Gallus gallus
 O75362ENSG00000171940Homo sapiens
 Zfp217ENSMUSG00000052056Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
znf536 / zinc finger protein 536 / O15090* / Q8K083* / Zfp536*ENSDARG0000010364820
znf516 / zinc finger protein 516 / Q7TSH3* / Q92618* / Zfp516*ENSDARG0000007080917
F1QQA8 / znf219 / zinc finger protein 219 / Q9P2Y4* / Q6IQX8* / Zfp219*ENSDARG0000007973814


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0007275 multicellular organism development IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000004111 esr1 / estrogen receptor 1 / P03372* / P19785* / Estrogen receptor *  / complex
 ENSDARG00000077404 ncoa3 / nuclear receptor coactivator 3 / Q9Y6Q9*  / complex
 ENSDARG00000068436 Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*  / complex
 ENSDARG00000105345 zgc:173552  / complex
 ENSDARG00000105359 Q4QRF4 / FP325123.1 / Histone H3.2   / complex
 ENSDARG00000100940 nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*  / complex






 

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