ENSGALG00000009540


Gallus gallus

Features
Gene ID: ENSGALG00000009540
  
Biological name :YAF2
  
Synonyms : YAF2 / YY1 associated factor 2
  
Possible biological names infered from orthology : Q8IY57 / Q99LW6
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 29508386
Gene end: 29535325
  
Corresponding Affymetrix probe sets: Gga.1754.1.S1_at (Chicken Array)   Gga.1754.1.S1_s_at (Chicken Array)   GgaAffx.12262.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015510
NCBI entrez gene - 417790     See in Manteia.
RefSeq - NM_001007850
RefSeq Peptide - NP_001007851
swissprot - Q5ZKC5
Ensembl - ENSGALG00000009540
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 yaf2ENSDARG00000015966Danio rerio
 YAF2ENSG00000015153Homo sapiens
 Yaf2ENSMUSG00000022634Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000003302566


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR033774  Yaf2/RYBP C-terminal binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003713 transcription coactivator activity ISS
 molecular_functionGO:0003714 transcription corepressor activity ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000011976 L3MBTL2 / L3MBTL2, polycomb repressive complex 1 subunit / P59178* / Q969R5* / Lethal(3)malignant brain tumor-like protein 2 *  / complex
 ENSGALG00000016454 E2F6 / E2F transcription factor 6 / O54917* / O75461* / Transcription factor E2F6 *  / reaction / complex
 ENSGALG00000011038 CBX3 / Q13185* / chromobox 3* / chromobox protein homolog 3 *  / reaction / complex
 ENSGALG00000016823 TFDP1* / TFDP3* / Q5H9I0* / Q08639* / Q14186* / transcription factor Dp-1* / transcription factor Dp family member 3*  / reaction / complex
 ENSGALG00000008230 PCGF6 / polycomb group ring finger 6 / Q99NA9* / Q9BYE7* / Polycomb group RING finger protein 6 *  / complex
 ENSGALG00000037219 RNF2 / ring finger protein 2 / Q99496* / Q9CQJ4* / E3 ubiquitin-protein ligase RING2 *  / complex






 

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