ENSDARG00000042880


Danio rerio

Features
Gene ID: ENSDARG00000042880
  
Biological name :si:ch211-222f23.6
  
Synonyms : si:ch211-222f23.6
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 1485234
Gene end: 1499721
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062939
NCBI entrez gene - 100141493     See in Manteia.
RefSeq - NM_001127404
RefSeq Peptide - NP_001120876
swissprot - B0S521
ZFIN ID - ZDB-GENE-070912-208
Ensembl - ENSDARG00000042880
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-141e20.2ENSDARG0000009334944
si:ch73-22o12.1 / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006283122
si:ch211-214p13.3ENSDARG0000008740322
CR936977.2 / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000010363821
nectin1a / nectin cell adhesion molecule 1a / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000006976721
pvrl2l / poliovirus receptor-related 2 like / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006339020
Q58EG3 / nectin3b / nectin cell adhesion molecule 3b / Q9JLB9* / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000000660420
cadm4 / cell adhesion molecule 4 / Q8NFZ8* / Q8R464*ENSDARG0000004029119
nectin4 / nectin cell adhesion molecule 4 / Q96NY8*ENSDARG0000010314819
cadm2b / cell adhesion molecule 2b / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000006263319
cadm1a / cell adhesion molecule 1a / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000003107518
cadm2a / cell adhesion molecule 2a / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000000993018
cadm3 / cell adhesion molecule 3 / Q8N126* / Q99N28*ENSDARG0000005701318
nectin1b / nectin cell adhesion molecule 1b / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000008603418
si:ch211-119e14.9 / Q8R007* / Q96NY8* / NECTIN4* / nectin cell adhesion molecule 4*ENSDARG0000007741917
cadm1b / cell adhesion molecule 1b / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000004267717
BX120005.1 / CRTAM* / O95727* / cytotoxic and regulatory T cell molecule*ENSDARG0000008932710


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013162  CD80-like, immunoglobulin C2-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IBA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0008037 cell recognition IBA
 biological_processGO:0046718 viral entry into host cell IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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