ENSDARG00000042677


Danio rerio

Features
Gene ID: ENSDARG00000042677
  
Biological name :cadm1b
  
Synonyms : cadm1b / cell adhesion molecule 1b
  
Possible biological names infered from orthology : CADM1 / cell adhesion molecule 1 / Q8R5M8 / Q9BY67
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 18863872
Gene end: 18988585
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062602
swissprot - F1QD76
ZFIN ID - ZDB-GENE-080327-34
Ensembl - ENSDARG00000042677
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CADM1ENSGALG00000014582Gallus gallus
 CADM1ENSG00000182985Homo sapiens
 Cadm1ENSMUSG00000032076Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cadm1a / cell adhesion molecule 1a / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000003107585
cadm2b / cell adhesion molecule 2b / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000006263348
cadm2a / cell adhesion molecule 2a / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000000993045
cadm3 / cell adhesion molecule 3 / Q8N126* / Q99N28*ENSDARG0000005701344
cadm4 / cell adhesion molecule 4 / Q8NFZ8* / Q8R464*ENSDARG0000004029139
nectin1b / nectin cell adhesion molecule 1b / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000008603421
nectin1a / nectin cell adhesion molecule 1a / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000006976720
si:ch73-22o12.1 / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006283120
Q58EG3 / nectin3b / nectin cell adhesion molecule 3b / Q9JLB9* / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000000660420
CR936977.2 / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000010363819
nectin4 / nectin cell adhesion molecule 4 / Q96NY8*ENSDARG0000010314818
si:ch211-141e20.2ENSDARG0000009334918
si:ch211-119e14.9 / Q8R007* / Q96NY8* / NECTIN4* / nectin cell adhesion molecule 4*ENSDARG0000007741918
si:ch211-222f23.6ENSDARG0000004288017
BX120005.1 / CRTAM* / O95727* / cytotoxic and regulatory T cell molecule*ENSDARG0000008932716
pvrl2l / poliovirus receptor-related 2 like / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006339016
si:ch211-214p13.3ENSDARG0000008740315


Protein motifs (from Interpro)
Interpro ID Name
 IPR003585  Neurexin/syndecan/glycophorin C
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013162  CD80-like, immunoglobulin C2-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IBA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
 biological_processGO:0008037 cell recognition IBA
 biological_processGO:0042271 susceptibility to natural killer cell mediated cytotoxicity IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions
Nectin/Necl trans heterodimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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