ENSDARG00000086034


Danio rerio

Features
Gene ID: ENSDARG00000086034
  
Biological name :nectin1b
  
Synonyms : nectin1b / nectin cell adhesion molecule 1b
  
Possible biological names infered from orthology : NECTIN1 / nectin cell adhesion molecule 1 / Q15223 / Q9JKF6
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 42970208
Gene end: 43226503
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000078889
Ensembl peptide - ENSDARP00000125946
swissprot - F1RC82
swissprot - I3ISQ6
ZFIN ID - ZDB-GENE-090224-2
Ensembl - ENSDARG00000086034
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NECTIN1ENSGALG00000039196Gallus gallus
 Q15223ENSG00000110400Homo sapiens
 Q9JKF6ENSMUSG00000032012Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nectin1a / nectin cell adhesion molecule 1a / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000006976751
Q58EG3 / nectin3b / nectin cell adhesion molecule 3b / Q9JLB9* / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000000660424
si:ch73-22o12.1 / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006283122
CR936977.2 / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000010363822
si:ch211-119e14.9 / Q8R007* / Q96NY8* / NECTIN4* / nectin cell adhesion molecule 4*ENSDARG0000007741918
nectin4 / nectin cell adhesion molecule 4 / Q96NY8*ENSDARG0000010314817
pvrl2l / poliovirus receptor-related 2 like / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006339017
cadm3 / cell adhesion molecule 3 / Q8N126* / Q99N28*ENSDARG0000005701315
cadm1b / cell adhesion molecule 1b / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000004267715
cadm2a / cell adhesion molecule 2a / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000000993014
cadm1a / cell adhesion molecule 1a / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000003107514
cadm4 / cell adhesion molecule 4 / Q8NFZ8* / Q8R464*ENSDARG0000004029114
si:ch211-141e20.2ENSDARG0000009334914
cadm2b / cell adhesion molecule 2b / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000006263314
si:ch211-222f23.6ENSDARG0000004288012
si:ch211-214p13.3ENSDARG0000008740312
BX120005.1 / CRTAM* / O95727* / cytotoxic and regulatory T cell molecule*ENSDARG000000893278


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013162  CD80-like, immunoglobulin C2-set
 IPR013783  Immunoglobulin-like fold
 IPR033314  Nectin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IBA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
 biological_processGO:0008037 cell recognition IBA
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0051963 regulation of synapse assembly IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions
Nectin/Necl trans heterodimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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