ENSG00000110400


Homo sapiens

Features
Gene ID: ENSG00000110400
  
Biological name :NECTIN1
  
Synonyms : NECTIN1 / nectin cell adhesion molecule 1 / Q15223
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q23.3
Gene start: 119623408
Gene end: 119729084
  
Corresponding Affymetrix probe sets: 208455_at (Human Genome U133 Plus 2.0 Array)   211845_at (Human Genome U133 Plus 2.0 Array)   211846_s_at (Human Genome U133 Plus 2.0 Array)   225211_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000264025
Ensembl peptide - ENSP00000344974
Ensembl peptide - ENSP00000345289
NCBI entrez gene - 5818     See in Manteia.
OMIM - 600644
RefSeq - NM_203285
RefSeq - NM_002855
RefSeq - NM_203286
RefSeq Peptide - NP_002846
RefSeq Peptide - NP_976030
RefSeq Peptide - NP_976031
swissprot - Q15223
Ensembl - ENSG00000110400
  
Related genetic diseases (OMIM): 225060 - Cleft lip/palate-ectodermal dysplasia syndrome, 225060
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nectin1aENSDARG00000069767Danio rerio
 nectin1bENSDARG00000086034Danio rerio
 NECTIN1ENSGALG00000039196Gallus gallus
 Q9JKF6ENSMUSG00000032012Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NQS3 / NECTIN3 / nectin cell adhesion molecule 3ENSG0000017770730
Q92692 / NECTIN2 / nectin cell adhesion molecule 2ENSG0000013020230
PVR / P15151 / poliovirus receptorENSG0000007300825
Q96NY8 / NECTIN4 / nectin cell adhesion molecule 4ENSG0000014321721
CADM3 / Q8N126 / cell adhesion molecule 3ENSG0000016270618
CADM2 / Q8N3J6 / cell adhesion molecule 2ENSG0000017516117
CADM1 / Q9BY67 / cell adhesion molecule 1ENSG0000018298517
CADM4 / Q8NFZ8 / cell adhesion molecule 4ENSG0000010576716
CRTAM / O95727 / cytotoxic and regulatory T cell moleculeENSG0000010994310


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013162  CD80-like, immunoglobulin C2-set
 IPR013783  Immunoglobulin-like fold
 IPR033314  Nectin-1
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002089 lens morphogenesis in camera-type eye IEA
 biological_processGO:0002934 desmosome organization IEA
 biological_processGO:0006826 iron ion transport IEA
 biological_processGO:0006955 immune response NAS
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules ISS
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules ISS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0008037 cell recognition IBA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0034332 adherens junction organization TAS
 biological_processGO:0046718 viral entry into host cell NAS
 biological_processGO:0048593 camera-type eye morphogenesis IEA
 biological_processGO:0051963 regulation of synapse assembly IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0070166 enamel mineralization IEA
 biological_processGO:0098609 cell-cell adhesion NAS
 biological_processGO:1902414 protein localization to cell junction IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005912 adherens junction NAS
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane NAS
 cellular_componentGO:0016342 catenin complex IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0032584 growth cone membrane IEA
 cellular_componentGO:0042734 presynaptic membrane IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0043296 apical junction complex IEA
 cellular_componentGO:0044291 cell-cell contact zone IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015026 coreceptor activity TAS
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046790 virion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding IPI


Pathways (from Reactome)
Pathway description
Adherens junctions interactions
Nectin/Necl trans heterodimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000288 Abnormality of the philtrum "An abnormality of the `philtrum` (FMA:59819)." [HPO:probinson]
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 HP:0000325 Triangular facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000411 Protruding ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000535 Sparse eyebrows 
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 HP:0000598 Abnormality of the ears 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000674 Anodontia "The congenital absence of all teeth." [HPO:curators]
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000968 Ectodermal dysplasia 
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 HP:0000972 Palmoplantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand and the sole of the foot." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001810 Dystrophic toenails 
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 HP:0002164 Nail dysplasia 
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 HP:0002167 Neurological speech impairment 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002296 Hypotrichosis, progressive "Progressively reduced or lacking hair growth." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002744 Bilateral cleft lip/palate "Cleft lip/palate affecting both sides of the face." [HPO:curators]
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 HP:0003307 Hyperlordosis 
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 HP:0003777 Pili torti "Pili (from Latin pilus, hair) torti (from Latin tortus, twisted) refers to short and brittle hairs that appear flattened and twisted when viewed through a microscope." [HPO:curators]
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 HP:0005338 Sparse lateral eyebrows 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006482 Abnormality of dental morphology 
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 HP:0006610 Wide intermamillary distance 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008070 Sparse hair 
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 HP:0008391 Mildly dystrophic fingernails 
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010621 Cutaneous syndactyly of the toes "Webbing or fusion of the toes involving soft parts only." [HPO:curators]
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0010719 Abnormality of hair texture "An abnormality of the texture of the `hair` (FMA:53667)." [HPO:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000162706 CADM3 / Q8N126 / cell adhesion molecule 3  / reaction / complex
 ENSG00000110400 Q15223 / NECTIN1 / nectin cell adhesion molecule 1  / complex / reaction
 ENSG00000130202 Q92692 / NECTIN2 / nectin cell adhesion molecule 2  / reaction / complex
 ENSG00000143217 Q96NY8 / NECTIN4 / nectin cell adhesion molecule 4  / complex / reaction
 ENSG00000177707 Q9NQS3 / NECTIN3 / nectin cell adhesion molecule 3  / reaction / complex
 ENSG00000130396 AFDN / P55196 / afadin, adherens junction formation factor  / complex / reaction






 

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