ENSDARG00000042995


Danio rerio

Features
Gene ID: ENSDARG00000042995
  
Biological name :sptlc1
  
Synonyms : serine palmitoyltransferase, long chain base subunit 1 / sptlc1
  
Possible biological names infered from orthology : O15269 / O35704 / Serine palmitoyltransferase 1
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 5234327
Gene end: 5265160
  
Corresponding Affymetrix probe sets: Dr.4599.1.A1_at (Zebrafish Array)   Dr.4599.2.S1_at (Zebrafish Array)   NM_001020471_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123531
Ensembl peptide - ENSDARP00000063119
NCBI entrez gene - 553981     See in Manteia.
RefSeq - NM_001020471
RefSeq Peptide - NP_001018307
swissprot - F6PE91
swissprot - F1QEL4
swissprot - Q502G6
ZFIN ID - ZDB-GENE-050522-61
Ensembl - ENSDARG00000042995
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPTLC1ENSGALG00000013493Gallus gallus
 O15269ENSG00000090054Homo sapiens
 O35704ENSMUSG00000021468Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004839  Aminotransferase, class I/classII
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009058 biosynthetic process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000030743 sptlc3 / serine palmitoyltransferase, long chain base subunit 3 / Q8BG54* / Q9NUV7* / Mus musculus serine palmitoyltransferase, long chain base subunit 3 (Sptlc3), transcript variant 1, mRNA.*  / complex
 ENSDARG00000071203 Q5BJC1 / sptssa / serine palmitoyltransferase, small subunit A / Q8R207* / Gm6993* / Q969W0*  / complex
 ENSDARG00000091658 Q1RLT2 / sptssb / serine palmitoyltransferase, small subunit B / Q8NFR3* / Q925E8*  / complex






 

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contact: otassy@igbmc.fr