ENSDARG00000071203


Danio rerio

Features
Gene ID: ENSDARG00000071203
  
Biological name :sptssa
  
Synonyms : Q5BJC1 / serine palmitoyltransferase, small subunit A / sptssa
  
Possible biological names infered from orthology : Gm6993 / Q8R207 / Q969W0
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 9944495
Gene end: 9950911
  
Corresponding Affymetrix probe sets: Dr.17290.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000095888
NCBI entrez gene - 541337     See in Manteia.
swissprot - Q5BJC1
ZFIN ID - ZDB-GENE-050320-26
Ensembl - ENSDARG00000071203
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPTSSAENSGALG00000025755Gallus gallus
 Q969W0ENSG00000165389Homo sapiens
 Gm6993ENSMUSG00000112187Mus musculus
 Q8R207ENSMUSG00000044408Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1RLT2 / sptssb / serine palmitoyltransferase, small subunit B / Q8NFR3* / Q925E8*ENSDARG0000009165846


Protein motifs (from Interpro)
Interpro ID Name
 IPR024512  Small subunit of serine palmitoyltransferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006665 sphingolipid metabolic process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0017059 serine C-palmitoyltransferase complex ISS
 molecular_functionGO:0004758 serine C-palmitoyltransferase activity ISS


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000042995 sptlc1 / serine palmitoyltransferase, long chain base subunit 1 / O15269* / O35704* / Serine palmitoyltransferase 1 *  / complex
 ENSDARG00000030743 sptlc3 / serine palmitoyltransferase, long chain base subunit 3 / Q8BG54* / Q9NUV7* / Mus musculus serine palmitoyltransferase, long chain base subunit 3 (Sptlc3), transcript variant 1, mRNA.*  / complex






 

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