ENSDARG00000043304


Danio rerio

Features
Gene ID: ENSDARG00000043304
  
Biological name :nop2
  
Synonyms : nop2 / NOP2 nucleolar protein homolog (yeast)
  
Possible biological names infered from orthology : NOP2 nucleolar protein / P46087
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 17234540
Gene end: 17251898
  
Corresponding Affymetrix probe sets: Dr.14960.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000102247
NCBI entrez gene - 321130     See in Manteia.
RefSeq - NM_001301359
RefSeq Peptide - NP_001288288
swissprot - F1QWP7
ZFIN ID - ZDB-GENE-050309-7
Ensembl - ENSDARG00000043304
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOP2ENSGALG00000037807Gallus gallus
 NOP2ENSG00000111641Homo sapiens
 Nop2ENSMUSG00000038279Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nsun6 / NOL1/NOP2/Sun domain family, member 6 / Q7TS68* / Q8TEA1* / Putative methyltransferase NSUN6 * / NOP2/Sun RNA methyltransferase family member 6*ENSDARG0000010347813
nsun4 / NOL1/NOP2/Sun domain family, member 4 / Q96CB9* / Q9CZ57* / C4P6S0* / NOP2/Sun RNA methyltransferase family member 4* / 5-methylcytosine rRNA methyltransferase NSUN4 *ENSDARG0000002132411
NSUN3 / NOP2/Sun RNA methyltransferase family member 3 / Q8CCT7* / Q9H649* / tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial *ENSDARG0000001302311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001678  SAM-dependent methyltransferase RsmB/NOP2-type
 IPR011023  Nop2p
 IPR018314  Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site
 IPR023267  RNA (C5-cytosine) methyltransferase
 IPR023273  RNA (C5-cytosine) methyltransferase, NOP2
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR031341  Ribosomal RNA small subunit methyltransferase F, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0070475 rRNA base methylation IBA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEA
 molecular_functionGO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr