ENSDARG00000021324


Danio rerio

Features
Gene ID: ENSDARG00000021324
  
Biological name :nsun4
  
Synonyms : NOL1/NOP2/Sun domain family, member 4 / nsun4
  
Possible biological names infered from orthology : 5-methylcytosine rRNA methyltransferase NSUN4 / C4P6S0 / NOP2/Sun RNA methyltransferase family member 4 / Q96CB9 / Q9CZ57
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 10160484
Gene end: 10169433
  
Corresponding Affymetrix probe sets: Dr.5991.1.A1_at (Zebrafish Array)   Dr.5991.2.S1_at (Zebrafish Array)   NM_001008649_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115280
NCBI entrez gene - 494106     See in Manteia.
RefSeq - NM_001008649
RefSeq - XM_021480053
RefSeq Peptide - NP_001008649
swissprot - B8JM23
ZFIN ID - ZDB-GENE-041212-77
Ensembl - ENSDARG00000021324
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NSUN4ENSGALG00000010360Gallus gallus
 NSUN4ENSG00000117481Homo sapiens
 Nsun4ENSMUSG00000028706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NSUN3 / NOP2/Sun RNA methyltransferase family member 3 / Q8CCT7* / Q9H649* / tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial *ENSDARG0000001302331
nsun6 / NOL1/NOP2/Sun domain family, member 6 / Q7TS68* / Q8TEA1* / Putative methyltransferase NSUN6 * / NOP2/Sun RNA methyltransferase family member 6*ENSDARG0000010347821
nop2 / NOP2 nucleolar protein homolog (yeast) / P46087* / NOP2 nucleolar protein*ENSDARG0000004330421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001678  SAM-dependent methyltransferase RsmB/NOP2-type
 IPR023267  RNA (C5-cytosine) methyltransferase
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031167 rRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005762 mitochondrial large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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