ENSMUSG00000028706


Mus musculus

Features
Gene ID: ENSMUSG00000028706
  
Biological name :Nsun4
  
Synonyms : 5-methylcytosine rRNA methyltransferase NSUN4 / C4P6S0 / Nsun4 / Q9CZ57
  
Possible biological names infered from orthology : NOP2/Sun RNA methyltransferase family member 4 / Q96CB9
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D1
Gene start: 116032842
Gene end: 116053876
  
Corresponding Affymetrix probe sets: 10515242 (MoGene1.0st)   1424839_a_at (Mouse Genome 430 2.0 Array)   1429110_a_at (Mouse Genome 430 2.0 Array)   1445570_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030474
Ensembl peptide - ENSMUSP00000130430
Ensembl peptide - ENSMUSP00000030475
NCBI entrez gene - 72181     See in Manteia.
MGI - MGI:1919431
RefSeq - NM_028142
RefSeq Peptide - NP_082418
swissprot - C4P6S0
swissprot - A0A0A0MQ81
swissprot - Q9CZ57
Ensembl - ENSMUSG00000028706
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nsun4ENSDARG00000021324Danio rerio
 NSUN4ENSGALG00000010360Gallus gallus
 NSUN4ENSG00000117481Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Nsun3 / Q8CCT7 / tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial / Q9H649* / NOP2/Sun RNA methyltransferase family member 3*ENSMUSG0000005031232
Nop2 / NOP2 nucleolar protein / P46087*ENSMUSG0000003827922
Nsun6 / Q7TS68 / Putative methyltransferase NSUN6 / Q8TEA1* / NOP2/Sun RNA methyltransferase family member 6*ENSMUSG0000002670719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001678  SAM-dependent methyltransferase RsmB/NOP2-type
 IPR023267  RNA (C5-cytosine) methyltransferase
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0031167 rRNA methylation ISO
 biological_processGO:0032259 methylation IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042256 mature ribosome assembly IMP
 biological_processGO:0070131 positive regulation of mitochondrial translation IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005762 mitochondrial large ribosomal subunit ISO
 molecular_functionGO:0000049 tRNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity ISO
 molecular_functionGO:0009383 rRNA (cytosine-C5-)-methyltransferase activity ISO
 molecular_functionGO:0016428 tRNA (cytosine-5-)-methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019843 rRNA binding IEA
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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