ENSDARG00000044282


Danio rerio

Features
Gene ID: ENSDARG00000044282
  
Biological name :smc5
  
Synonyms : smc5 / structural maintenance of chromosomes 5
  
Possible biological names infered from orthology : Q8CG46 / Q8IY18 / Structural maintenance of chromosomes protein 5
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 15617741
Gene end: 15644974
  
Corresponding Affymetrix probe sets: Dr.255.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111416
Ensembl peptide - ENSDARP00000146284
Ensembl peptide - ENSDARP00000117735
Ensembl peptide - ENSDARP00000091965
NCBI entrez gene - 566749     See in Manteia.
RefSeq - NM_001193541
RefSeq - XM_005155575
RefSeq Peptide - NP_001180470
swissprot - F1QEQ8
swissprot - E9QDR4
swissprot - E7F0W1
ZFIN ID - ZDB-GENE-061013-288
Ensembl - ENSDARG00000044282
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMC5ENSGALG00000015118Gallus gallus
 SMC5ENSG00000198887Homo sapiens
 Smc5ENSMUSG00000024943Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR027131  Structural maintenance of chromosomes protein 5
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0007062 sister chromatid cohesion IEA
 cellular_componentGO:0030915 Smc5-Smc6 complex IEA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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