ENSDARG00000044301


Danio rerio

Features
Gene ID: ENSDARG00000044301
  
Biological name :atf1
  
Synonyms : activating transcription factor 1 / atf1
  
Possible biological names infered from orthology : Cyclic AMP-dependent transcription factor ATF-1 / P18846 / P81269
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 39505565
Gene end: 39521832
  
Corresponding Affymetrix probe sets: Dr.6228.1.S1_at (Zebrafish Array)   NM_199723_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000065037
Ensembl peptide - ENSDARP00000151713
NCBI entrez gene - 325609     See in Manteia.
RefSeq - NM_199723
RefSeq Peptide - NP_956017
swissprot - Q7T351
ZFIN ID - ZDB-GENE-030131-4334
Ensembl - ENSDARG00000044301
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000033614Gallus gallus
 ATF1ENSG00000123268Homo sapiens
 Atf1ENSMUSG00000023027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
creb1b / cAMP responsive element binding protein 1b / CREB1* / P16220* / Q01147* / cAMP responsive element binding protein 1* / Cyclic AMP-responsive element-binding protein 1 *ENSDARG0000009342059
creb1a / cAMP responsive element binding protein 1a / CREB1* / P16220* / Q01147* / cAMP responsive element binding protein 1* / Cyclic AMP-responsive element-binding protein 1 *ENSDARG0000005358659
crema / cAMP responsive element modulator a / CREM* / P27699* / Q03060* / cAMP responsive element modulator*ENSDARG0000002321721
cremb / cAMP responsive element modulator bENSDARG0000010289919


Protein motifs (from Interpro)
Interpro ID Name
 IPR001630  cAMP response element binding (CREB) protein
 IPR003102  Coactivator CBP, pKID
 IPR004827  Basic-leucine zipper domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
CREB phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000060551 rps6ka5 / ribosomal protein S6 kinase, polypeptide 5 / O75582* / Q8C050* / ribosomal protein S6 kinase A5*  / reaction






 

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