ENSDARG00000044325


Danio rerio

Features
Gene ID: ENSDARG00000044325
  
Biological name :zgc:193690
  
Synonyms : zgc:193690
  
Possible biological names infered from orthology : AC012184.2 / ATP-dependent RNA helicase DDX19B isoform 3 / DDX19B / DEAD-box helicase 19B / Q9UMR2
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 37095792
Gene end: 37113430
  
Corresponding Affymetrix probe sets: Dr.15851.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093660
Ensembl peptide - ENSDARP00000122395
Ensembl peptide - ENSDARP00000113804
NCBI entrez gene - 563448     See in Manteia.
RefSeq - NM_001128715
RefSeq Peptide - NP_001122187
swissprot - F1Q5T4
swissprot - B3DFU8
swissprot - F6P5R1
swissprot - A0A0J9YIV9
ZFIN ID - ZDB-GENE-080721-12
Ensembl - ENSDARG00000044325
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX19BENSGALG00000039967Gallus gallus
 AC012184.2ENSG00000260537Homo sapiens
 DDX19BENSG00000157349Homo sapiens
 Ddx19bENSMUSG00000033658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx19 / DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) / Q9UMR2* / DDX19B* / AC012184.2* / DEAD-box helicase 19B* / ATP-dependent RNA helicase DDX19B isoform 3 *ENSDARG0000000569976


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008380 RNA splicing IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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