ENSDARG00000044669


Danio rerio

Features
Gene ID: ENSDARG00000044669
  
Biological name :hp1bp3
  
Synonyms : heterochromatin protein 1, binding protein 3 / hp1bp3
  
Possible biological names infered from orthology : Mus musculus heterochromatin protein 1, binding protein 3 (Hp1bp3), transcript variant 9, mRNA. / Q3TEA8 / Q5SSJ5
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 37612214
Gene end: 37631714
  
Corresponding Affymetrix probe sets: Dr.477.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000071963
Ensembl peptide - ENSDARP00000142470
Ensembl peptide - ENSDARP00000140753
NCBI entrez gene - 558102     See in Manteia.
RefSeq - NM_001199725
RefSeq Peptide - NP_001186654
swissprot - E7FAZ5
swissprot - A0A140LGU1
swissprot - A0A0R4IWH8
ZFIN ID - ZDB-GENE-060810-79
Ensembl - ENSDARG00000044669
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HP1BP3ENSGALG00000010079Gallus gallus
 HP1BP3ENSG00000127483Homo sapiens
 Hp1bp3ENSMUSG00000028759Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
h1m / linker histone H1M / H1FOO* / Q8IZA3* / H1 histone family member O oocyte specific*ENSDARG000001028929


Protein motifs (from Interpro)
Interpro ID Name
 IPR005818  Linker histone H1/H5, domain H15
 IPR011991  ArsR-like helix-turn-helix domain
 IPR033061  Heterochromatin protein 1-binding protein 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0070828 heterochromatin organization IEA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr