ENSDARG00000044813


Danio rerio

Features
Gene ID: ENSDARG00000044813
  
Biological name :vps33b
  
Synonyms : vacuolar protein sorting 33B / vps33b
  
Possible biological names infered from orthology : AC068831.7 / P59016 / Q9H267 / VPS33B, late endosome and lysosome associated
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 50376097
Gene end: 50395395
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000065867
Ensembl peptide - ENSDARP00000153587
NCBI entrez gene - 541534     See in Manteia.
RefSeq - NM_001014348
RefSeq Peptide - NP_001014370
swissprot - F1QIC2
ZFIN ID - ZDB-GENE-050327-73
Ensembl - ENSDARG00000044813
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS33BENSGALG00000012833Gallus gallus
 AC068831.7ENSG00000284946Homo sapiens
 Q9H267ENSG00000184056Homo sapiens
 P59016ENSMUSG00000030534Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps33a / vacuolar protein sorting 33A / Q9D2N9* / Q96AX1* / AC048338.1* / VPS33A, CORVET/HOPS core subunit*ENSDARG0000010111631


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0016192 vesicle-mediated transport IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000036 liver and biliary system liver and biliary system morphology , abnormal
liver and biliary system cytoplasm composition , abnormal
liver and biliary system epithelial cell structure , abnormal
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 ZFA:0005164 bile ductule bile ductule decreased amount , abnormal
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 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct sparse , abnormal
intrahepatic bile duct decreased amount , abnormal
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 ZFA:0009269 enterocyte enterocyte cytoplasm composition , abnormal
enterocyte Golgi stack dilated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr