ENSG00000184056


Homo sapiens

Features
Gene ID: ENSG00000184056
  
Biological name :VPS33B
  
Synonyms : Q9H267 / VPS33B / VPS33B, late endosome and lysosome associated
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q26.1
Gene start: 90998416
Gene end: 91022603
  
Corresponding Affymetrix probe sets: 218415_at (Human Genome U133 Plus 2.0 Array)   44111_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000460413
Ensembl peptide - ENSP00000327650
Ensembl peptide - ENSP00000444053
NCBI entrez gene - 26276     See in Manteia.
OMIM - 608552
RefSeq - XM_017022076
RefSeq - NM_001289148
RefSeq - NM_001289149
RefSeq - NM_018668
RefSeq - XM_005254887
RefSeq - XM_011521448
RefSeq - XM_011521449
RefSeq - XM_017022075
RefSeq Peptide - NP_061138
RefSeq Peptide - NP_001276077
RefSeq Peptide - NP_001276078
swissprot - A0A0S2Z577
swissprot - Q9H267
swissprot - G3V3F9
swissprot - F5H008
Ensembl - ENSG00000184056
  
Related genetic diseases (OMIM): 208085 - Arthrogryposis, renal dysfunction, and cholestasis 1, 208085
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps33bENSDARG00000044813Danio rerio
 VPS33BENSGALG00000012833Gallus gallus
 P59016ENSMUSG00000030534Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC068831.7ENSG0000028494696
Q96AX1 / VPS33A / VPS33A, CORVET/HOPS core subunitENSG0000013971932
AC048338.1ENSG0000025686128


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein
 IPR027121  Vacuolar protein sorting-associated protein 33
 IPR036045  Sec1-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0007032 endosome organization IMP
 biological_processGO:0015031 protein transport IMP
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0017185 peptidyl-lysine hydroxylation IMP
 biological_processGO:0032400 melanosome localization IDA
 biological_processGO:0032418 lysosome localization IDA
 biological_processGO:0032963 collagen metabolic process IMP
 biological_processGO:0061025 membrane fusion IMP
 biological_processGO:0070889 platelet alpha granule organization IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IDA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030897 HOPS complex IDA
 cellular_componentGO:0031091 platelet alpha granule IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane IDA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0055037 recycling endosome IEA
 cellular_componentGO:0071439 clathrin complex IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000121 Nephrocalcinosis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001508 Failure to thrive 
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 HP:0001522 Death in infancy 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001667 Right ventricular hypertrophy "In this case the right ventricle is more muscular than normal, causing a characteristic boot-shaped (coeur-en-sabot) appearance as seen on anterior- posterior chest x-rays. Right ventricular hypertrophy is commonly associated with any form of right ventricular outflow obstruction or pulmonary hypertension, which may in turn owe its origin to left-sided disease. The echocardiographic signs are thickening of the anterior right ventricular wall and the septum. Cavity size is usually normal, or slightly enlarged. In many cases there is associated volume overload present due to tricuspid regurgitation, in the absence of this, septal motion is normal. This feature can also be a component of the separat entity tetralogy of Fallot in which case it is generally agreed to be a secondary anomaly, as the level of hypertrophy generally increases with age." [HPO:curators]
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 HP:0001884 Talipes calcaneovalgus "Talipes calcaneovalgus is a flexible foot deformity (as opposed to a rigid congenital vertical talus foot deformity) that can either present as a positional or structural foot deformity depending on severity and/or causality. The axis of calcaneovalgus deformity is in the tibiotalar joint, where the foot is positioned in extreme hyperextension. On inspection, the foot has an "up and out" appearance, with the dorsal forefoot practically touching the anterior aspect of the ankle and lower leg." [HPO:curators]
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 HP:0001892 Bleeding diathesis "An abnormal susceptibility to bleeding because of a defect in coagulation." [HPO:curators]
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 HP:0001942 Metabolic acidosis 
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 HP:0001944 Dehydration 
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 HP:0001947 Renal tubular acidosis 
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 HP:0002611 Cholestatic liver disease 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002908 Conjugated hyperbilirubinemia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009806 Nephrogenic diabetes insipidus "A form of diabetes insipidus caused by failure of the kidneys to respond to vasopressin (AVP)." [HPO:curators]
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 HP:0200084 Giant cell hepatitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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