ENSG00000139719


Homo sapiens

Features
Gene ID: ENSG00000139719
  
Biological name :VPS33A
  
Synonyms : Q96AX1 / VPS33A / VPS33A, CORVET/HOPS core subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.31
Gene start: 122229564
Gene end: 122266521
  
Corresponding Affymetrix probe sets: 204590_x_at (Human Genome U133 Plus 2.0 Array)   227815_at (Human Genome U133 Plus 2.0 Array)   244400_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495062
Ensembl peptide - ENSP00000439255
Ensembl peptide - ENSP00000267199
Ensembl peptide - ENSP00000494419
Ensembl peptide - ENSP00000494935
Ensembl peptide - ENSP00000442392
Ensembl peptide - ENSP00000442951
NCBI entrez gene - 65082     See in Manteia.
OMIM - 610034
RefSeq - NM_022916
RefSeq - NM_001351018
RefSeq - NM_001351019
RefSeq Peptide - NP_001337947
RefSeq Peptide - NP_075067
RefSeq Peptide - NP_001337948
swissprot - Q96AX1
swissprot - F5H2X5
swissprot - F5H6Y0
swissprot - F5H7N5
Ensembl - ENSG00000139719
  
Related genetic diseases (OMIM): 617303 - Mucopolysaccharidosis-plus syndrome, 617303
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps33aENSDARG00000101116Danio rerio
 ENSGALG00000004440Gallus gallus
 Q9D2N9ENSMUSG00000029434Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC048338.1ENSG0000025686189
Q9H267 / VPS33B / VPS33B, late endosome and lysosome associatedENSG0000018405633
AC068831.7ENSG0000028494632


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein
 IPR027121  Vacuolar protein sorting-associated protein 33
 IPR036045  Sec1-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0030220 platelet formation ISS
 biological_processGO:0032400 melanosome localization IDA
 biological_processGO:0032418 lysosome localization IDA
 biological_processGO:0035751 regulation of lysosomal lumen pH IMP
 biological_processGO:0048070 regulation of developmental pigmentation ISS
 biological_processGO:0097352 autophagosome maturation IMP
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005776 autophagosome ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IDA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030897 HOPS complex IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0071439 clathrin complex IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000092 Tubular atrophy 
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 HP:0000093 Proteinuria 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000280 Coarse facial features 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000470 Short neck 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000648 Optic atrophy 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000943 Dysostosis multiplex 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001403 Macrovesicular steatosis 
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001903 Anemia 
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 HP:0002098 Respiratory distress 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002208 Coarse hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002680 J-shaped sella turcica "A deformity of the sella turcica whereby the sella extends further anterior than normal such that the anterior clinoid process appears to overhang it, giving the appearance of the letter J on imaging of the skull." [HPO:curators]
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 HP:0002869 Flared iliac wings 
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 HP:0003593 Early onset 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0008807 Acetabular dysplasia 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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