ENSDARG00000045606


Danio rerio

Features
Gene ID: ENSDARG00000045606
  
Biological name :alkbh3
  
Synonyms : alkbh3 / alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
  
Possible biological names infered from orthology : alkB homolog 3, alpha-ketoglutaratedependent dioxygenase / Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 / Gm27027 / Q8K1E6 / Q96Q83
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 30233638
Gene end: 30264796
  
Corresponding Affymetrix probe sets: Dr.14529.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116105
Ensembl peptide - ENSDARP00000149194
Ensembl peptide - ENSDARP00000122157
Ensembl peptide - ENSDARP00000118854
Ensembl peptide - ENSDARP00000067056
Ensembl peptide - ENSDARP00000105012
NCBI entrez gene - 792266     See in Manteia.
RefSeq - XM_005163146
RefSeq Peptide - NP_001003511
swissprot - E9QCL7
swissprot - E9QHT7
swissprot - F1QRD8
swissprot - E9QHQ9
ZFIN ID - ZDB-GENE-040801-254
Ensembl - ENSDARG00000045606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALKBH3ENSGALG00000041309Gallus gallus
 ALKBH3ENSG00000166199Homo sapiens
 Alkbh3ENSMUSG00000040174Mus musculus
 Gm27027ENSMUSG00000098004Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
alkbh2 / alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase / Q6NS38* / Q6P6J4* / DNA oxidative demethylase ALKBH2 *ENSDARG0000005985627


Protein motifs (from Interpro)
Interpro ID Name
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR027450  Alpha-ketoglutarate-dependent dioxygenase AlkB-like
 IPR032854  Alkylated DNA repair protein alkB homologue 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006307 DNA dealkylation involved in DNA repair IEA
 biological_processGO:0035552 oxidative single-stranded DNA demethylation IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000013058 ascc2 / activating signal cointegrator 1 complex subunit 2 / Q91WR3* / Q9H1I8*  / complex






 

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