ENSDARG00000045611


Danio rerio

Features
Gene ID: ENSDARG00000045611
  
Biological name :nfybb
  
Synonyms : nfybb / nuclear transcription factor Y, beta b
  
Possible biological names infered from orthology : NFYB / nuclear transcription factor Y subunit beta / P25208 / P63139
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 28823952
Gene end: 28846945
  
Corresponding Affymetrix probe sets: Dr.14764.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000067071
Ensembl peptide - ENSDARP00000127511
swissprot - F6P9N2
swissprot - X1WBC0
ZFIN ID - ZDB-GENE-050306-25
Ensembl - ENSDARG00000045611
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFYBENSGALG00000041193Gallus gallus
 NFYBENSG00000120837Homo sapiens
 NfybENSMUSG00000020248Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfyba / nuclear transcription factor Y, beta a / NFYB* / P25208* / P63139* / nuclear transcription factor Y subunit beta*ENSDARG0000003918574
pole3 / polymerase (DNA directed), epsilon 3 (p17 subunit) / Q9NRF9* / DNA polymerase epsilon 3, accessory subunit*ENSDARG0000000855117


Protein motifs (from Interpro)
Interpro ID Name
 IPR003956  Transcription factor, NFYB/HAP3, conserved site
 IPR003958  Transcription factor CBF/NF-Y/archaeal histone domain
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001114 head head cell apoptotic , abnormal
head decreased length , abnormal
head decreased width , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage morphology , abnormal
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 ZFA:0001306 pharyngeal arch pharyngeal arch hypoplastic , abnormal
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 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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