ENSDARG00000052511


Danio rerio

Features
Gene ID: ENSDARG00000052511
  
Biological name :lin28b
  
Synonyms : lin28b / lin-28 homolog B (C. elegans)
  
Possible biological names infered from orthology : B / lin-28 homolog B / Q45KJ6 / Q6ZN17
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 47491247
Gene end: 47531869
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000102537
NCBI entrez gene - 103752590     See in Manteia.
RefSeq - NM_001301416
RefSeq Peptide - NP_001288345
swissprot - E7F3W9
ZFIN ID - ZDB-GENE-140811-1
Ensembl - ENSDARG00000052511
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN28BENSGALG00000026761Gallus gallus
 LIN28BENSG00000187772Homo sapiens
 B ENSMUSG00000063804Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lin28a / Q803L0 / lin-28 homolog A (C. elegans)ENSDARG0000001699956
LIN28A / si:ch1073-284b18.2 / A * / Q8K3Y3* / Q9H9Z2* / lin-28 homolog A*ENSDARG0000000432852


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0043009 chordate embryonic development IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism anterior-posterior axis decreased length , abnormal
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 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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