ENSDARG00000004328


Danio rerio

Features
Gene ID: ENSDARG00000004328
  
Biological name :LIN28A
  
Synonyms : LIN28A / si:ch1073-284b18.2
  
Possible biological names infered from orthology : A / lin-28 homolog A / Q8K3Y3 / Q9H9Z2
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 4654333
Gene end: 4686245
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000015591
Ensembl peptide - ENSDARP00000138197
NCBI entrez gene - 799825     See in Manteia.
swissprot - A0A0R4IRA3
swissprot - E7F2G7
ZFIN ID - ZDB-GENE-110914-157
Ensembl - ENSDARG00000004328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN28AENSGALG00000036022Gallus gallus
 LIN28AENSG00000131914Homo sapiens
 A ENSMUSG00000050966Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lin28a / Q803L0 / lin-28 homolog A (C. elegans)ENSDARG0000001699968
lin28b / lin-28 homolog B (C. elegans) / Q6ZN17* / lin-28 homolog B*ENSDARG0000005251156


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Transcriptional regulation of pluripotent stem cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr