ENSGALG00000036022


Gallus gallus

Features
Gene ID: ENSGALG00000036022
  
Biological name :LIN28A
  
Synonyms : LIN28A / protein lin-28 homolog A
  
Possible biological names infered from orthology : A / lin-28 homolog A / Q8K3Y3 / Q9H9Z2
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 175670
Gene end: 186981
  
Corresponding Affymetrix probe sets: GgaAffx.20258.1.S1_at (Chicken Array)   GgaAffx.245.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056558
NCBI entrez gene - 428206     See in Manteia.
RefSeq - NM_001031774
RefSeq Peptide - NP_001026944
swissprot - A0A1D5PUF5
Ensembl - ENSGALG00000036022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN28AENSDARG00000004328Danio rerio
 LIN28AENSG00000131914Homo sapiens
 A ENSMUSG00000050966Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIN28B / Q45KJ4 / Protein lin-28 homolog B / B * / Q45KJ6* / Q6ZN17* / lin-28 homolog B*ENSGALG0000002676166


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007281 germ cell development IEA
 biological_processGO:0010586 miRNA metabolic process IEA
 biological_processGO:0010587 miRNA catabolic process IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0031054 pre-miRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IEA
 biological_processGO:0032008 positive regulation of TOR signaling IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045686 negative regulation of glial cell differentiation IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0051897 positive regulation of protein kinase B signaling IEA
 biological_processGO:0060964 regulation of gene silencing by miRNA IEA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:1901724 positive regulation of cell proliferation involved in kidney development IEA
 biological_processGO:1903800 positive regulation of production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:2000767 positive regulation of cytoplasmic translation IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005844 polysome IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 molecular_functionGO:0002151 G-quadruplex RNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0031369 translation initiation factor binding IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:1905538 polysome binding IEA
 molecular_functionGO:1990825 sequence-specific mRNA binding IEA


Pathways (from Reactome)
Pathway description
Transcriptional regulation of pluripotent stem cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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