ENSG00000187772


Homo sapiens

Features
Gene ID: ENSG00000187772
  
Biological name :LIN28B
  
Synonyms : LIN28B / lin-28 homolog B / Q6ZN17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q16.3
Gene start: 104936616
Gene end: 105083332
  
Corresponding Affymetrix probe sets: 229349_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000344401
Ensembl peptide - ENSP00000490468
Ensembl peptide - ENSP00000489735
NCBI entrez gene - 389421     See in Manteia.
OMIM - 611044
RefSeq - XM_006715477
RefSeq - XM_011535818
RefSeq - NM_001004317
RefSeq Peptide - NP_001004317
swissprot - Q6ZN17
swissprot - A0A1B0GVD3
swissprot - A0A1B0GTK2
Ensembl - ENSG00000187772
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lin28bENSDARG00000052511Danio rerio
 LIN28BENSGALG00000026761Gallus gallus
 B ENSMUSG00000063804Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIN28A / Q9H9Z2 / lin-28 homolog AENSG0000013191453


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010587 miRNA catabolic process IMP
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031054 pre-miRNA processing IMP
 biological_processGO:0031123 RNA 3"-end processing IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0004375 Neoplasia of the nervous system 
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 HP:0011976 Elevated urinary catecholamines "An increased concentration of `catecholamine` (CHEBI:33567) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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