ENSDARG00000052856


Danio rerio

Features
Gene ID: ENSDARG00000052856
  
Biological name :khdrbs1a
  
Synonyms : KH domain containing, RNA binding, signal transduction associated 1a / khdrbs1a
  
Possible biological names infered from orthology : KH domain-containing, RNA-binding, signal transduction-associated protein 1 / KHDRBS1 / KH RNA binding domain containing, signal transduction associated 1 / Q07666 / Q60749
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 45009957
Gene end: 45022527
  
Corresponding Affymetrix probe sets: Dr.18282.1.S1_a_at (Zebrafish Array)   Dr.18282.4.A1_at (Zebrafish Array)   Dr.18282.7.S1_at (Zebrafish Array)   Dr.18282.7.S1_a_at (Zebrafish Array)   Dr.18282.7.S1_x_at (Zebrafish Array)   NM_130925_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000106646
Ensembl peptide - ENSDARP00000145957
Ensembl peptide - ENSDARP00000138873
Ensembl peptide - ENSDARP00000069273
NCBI entrez gene - 30082     See in Manteia.
RefSeq - NM_130925
RefSeq - XM_009307569
RefSeq Peptide - NP_571000
swissprot - A2CE73
swissprot - Q6NW56
swissprot - A0A0R4ISK8
ZFIN ID - ZDB-GENE-000210-25
Ensembl - ENSDARG00000052856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KHDRBS1ENSGALG00000003272Gallus gallus
 Q07666ENSG00000121774Homo sapiens
 Q60749ENSMUSG00000028790Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
khdrbs1b / KH domain containing, RNA binding, signal transduction associated 1b / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000007047563
Q08BJ2 / khdrbs2 / KH domain containing, RNA binding, signal transduction associated 2 / Q9WU01* / Q5VWX1* / KH RNA binding domain containing, signal transduction associated 2* / KH domain-...ENSDARG0000006946944
qkia / QKI, KH domain containing, RNA binding a / Qk* / QKI* / Q9QYS9* / Q96PU8* / Protein quaking * / QKI, KH domain containing RNA binding*ENSDARG0000009747826
qki2 / Q6P104 / QKI, KH domain containing, RNA binding 2ENSDARG0000001001825
qkib / QKI, KH domain containing, RNA binding bENSDARG0000000202624
sf1 / splicing factor 1 / Q15637* / Q64213*ENSDARG0000000818820


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR032335  Sam68, tyrosine-rich domain
 IPR032571  KHDRBS, Qua1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
PTK6 Regulates Proteins Involved in RNA Processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000059956 ptk6b / PTK6 protein tyrosine kinase 6b / PTK6* / Q64434* / Q13882* / protein tyrosine kinase 6* / PTK6 protein tyrosine kinase 6*  / complex / reaction
 ENSDARG00000017947 ptk6a / PTK6 protein tyrosine kinase 6a / PTK6* / Q64434* / Q13882* / protein tyrosine kinase 6* / PTK6 protein tyrosine kinase 6*  / reaction / complex






 

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